Query= MSMg01no308_e01.b1 MSMg01no308_e01.b1 CHROMAT_FILE:
MSMg01no308_e01.b1 PHD_FILE: MSMg01no308_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:31 2005
(675 letters)
>mm_chr3_125075318_125076399
Length = 1082
Score = 1158 bits (599), Expect = 0.0
Identities = 655/677 (96%), Gaps = 9/677 (1%)
Strand = Plus / Minus
Query: 7 ggaattcttttattttgctctaatgtacatggtatatgaagtttaattgtataaggaaac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ggaattcttttattttgctctaatgtacatggtatatgaagtttaattgtataaggaaac 823
Query: 67 atacttttgaaaataattcccaaataggatttatttgttttagccctgtcaatttaccaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 atacttttgaaaataattcccaaataggatttatttgttttagccctgtcaatttaccaa 763
Query: 127 agtagtgtgctgacagatgtatatgaaaatgtgaaattctcaagattgtagtgtagcatc 186
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 762 agtaatgtgctgacagatgtatatgaaaatgtgaaattctcaagattttagtgtagcatc 703
Query: 187 tg-tcagtgaatacttagtattgcagacaaagattggtagttttgatcaaagcttgggac 245
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgct-agtgaatacttagtattgcagacaaagattggtagttttgatcaaagcttgggac 644
Query: 246 atgtgcaggcttagtctgagcgacagtccagcatgtcacattctaatgtcagtgttcctg 305
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atgtgcaggcttagtctgaacgacagtccagcatgtcacattctaatgtcagtgttcctg 584
Query: 306 tgctgtttctagtggcacaacattttgacagtagctgaacatccctatgaatattaataa 365
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 583 tgctgtttctagtggcacaacatttcgacagtagctggtcatccctatgaatattaataa 524
Query: 366 caga-tttttctccactacacttaaactacatccacagttaccactcaaccattcttacc 424
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cagattttttctacactacacttaaactacatccacagttaccactcaaccattcttacc 464
Query: 425 caactgaagtcagtactagacatcatgcaacaccttctgaatatgaaaatggtattatga 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 463 caactgaagtcagtactagacatcatgcaacatcttctgaatatgaaaatggtattatga 404
Query: 485 atatgccatgggctgtaaatttctaatgaattgagaagatgttgaattcttttagatttg 544
||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 403 atatgccgtgggctgtaaattcctaatgaattgagaagatgttgaattcttttggatttg 344
Query: 545 caaccaactggtacttgcatcttaataaaattgggaatatttcataaagacataaattt- 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caaccaactggtacttgcatcttaataaaattgggaatatttcataaagacataaatttt 284
Query: 604 -----tctatagcttactgtctataaatcagtaattatatctaatattgtacaaatattc 658
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 283 ctgtatctatagcttactatctataaatcagtaattatatctaatattgtagaaatattc 224
Query: 659 tattggggaatataaat 675
|||||||||||||||||
Sbjct: 223 tattggggaatataaat 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1082
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1072
Effective search space: 712880
Effective search space used: 712880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_e01.g1 MSMg01no308_e01.g1 CHROMAT_FILE:
MSMg01no308_e01.g1 PHD_FILE: MSMg01no308_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:31 2005
(641 letters)
>mm_chr3_124996413_124997453
Length = 1041
Score = 1135 bits (587), Expect = 0.0
Identities = 632/657 (96%), Gaps = 17/657 (2%)
Strand = Plus / Plus
Query: 1 tgcattagatgggttccttacatgatgagtagggaagtggcctaactggaggccatcatt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 200 tgcattagatgggttccttacatgatgagtagggaagtggcctaactggaggccgtcatt 259
Query: 61 tgtggtatgccatatgtgaacatgtcttgccctggtccttttctgaattcttttgatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtggtatgccatatgtgaacatgtcttgccctggtccttttctgaattcttttgatctg 319
Query: 121 attccaggtttacaggatgggaatcctgagtcctgcagttcctctttcactacaaggtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attccaggtttacaggatgggaatcctgagtcctgcagttcctctttcactacaaggtac 379
Query: 181 tgacaattgcgaaaccacaggtgcaaaggagttttctcttccttacattgttttctacag 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgacacttgcgaaaccacaggtgcaaaggagttttctcttccttacattgttttctacag 439
Query: 241 atttttggccacaataataatactgctaattaacccatgaacttggacaaaaataatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttttggccacaataataatactgctaattaacccatgaacttggacaaaaataatgat 499
Query: 301 tgaaaacaggagtggaaggaaacctcaagggaaacaatccaaaccacatgttgtaaaata 360
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 500 tgaaaacaggagtggaaggaaacctcaagggaaacaatccaaagcagatgttgtaaaata 559
Query: 361 atttaaataaatatgaga-gaaatgagaaagatataagcaacatgcttttgaaataccta 419
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttaaataaatatgaaaagaaatgagaaagatataagcaacatgcttttgaaataccta 619
Query: 420 gtaacaagtgactgaaaatttttcctaggtatatttaagtgggcagttaaactgaacacc 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtaacaagtgactgaaaattttccctaggtatatttaagtgggcagttaaactgaacacc 679
Query: 480 acaacctagcactactgatactaacactggtcatgtactttgtttgattgtttgttt--- 536
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 680 acaacctagcactactgatactaacactggtcatgtattttgtttgtttgtttgtttgtt 739
Query: 537 -------------tttgagacagggtttctttgtgtagccctggctgccctggaactcac 583
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtctgtttgttttttgagacagggtttctttgtgtagccctggctgccctggaactcac 799
Query: 584 tctgtagaccaggctggcctcgaactcagaaatccacctgcctctgtttccaaaatg 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tctgtagaccaggctggcctcgaactcagaaatccacctgcctctgtttccaaaatg 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
