BAC Information

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BAC

Clone NameMSMg01-308I16
Chromosome3 (Build37)
Map Location 137,688,276 - 137,688,638
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039447, Emcn, EG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1
Downstream geneEG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308I16.T7 (MSMg01no308_i16.b1)MSMg01-308I16.TJ (MSMg01no308_i16.g1)
ACCAG432595AG432596
length777734
length of high quality
(start - end)
375 (36 - 410)160 (56 - 215)
definitionCHROMAT_FILE: MSMg01no308_i16.b1 PHD_FILE: MSMg01no308_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:53 2005CHROMAT_FILE: MSMg01no308_i16.g1 PHD_FILE: MSMg01no308_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGCC
CTATACCTCACACCAGGACAAATTCTGGCCTGTAGACCAAACAAACCCGT
TCTACTGATAGCTCCTTTGGATCACAGTGTTTCATCAGAGCAACAGAAAG
AAAAGCAGAAGAGCATTCAATTTGTGTCAAGTGCTTTTGAAGAGATGTAA
TATTCATATGTATACAGAAACCCACAAGCCTCATTTTTCTAGAAATAATA
GCATTCACAGCGATGTCAGATAAATCCCACCTTAACCTACCCATATTGGA
CAGAATAATAAAGACTGACATTATATTTCCTTCCAACCCTTATCCTACAT
GTTGCAAAATTCTAATCTCTCTCCTCATGCAGGCATCTTATGTCTGCCTA
TTGCCCCCCCCCGCATTGGGTTTTTTTTTTTTTTTTGGGCCAGGTTGAGA
TGATTAATTACCATTGCTTCTACAAAGCTATGCATGCATACAGTGTTTGA
TGCTATCATATCCAAAGTTTAATTTGTTCTTTCATGTCTTTTTATTCATT
TCCTTATCCTTCTTCTTCTTTCCATCCATGTTACATGATAACTTATATCT
TTCTTTTTTTTGTCTTTTATATCCTGCCTGTTTTGCATGTATTATTATTA
CTCATCCTCCCCCTATCCTCTCTATGGTCTTTCCAATTTAACCTTTCCCC
CATTCCCTTCCTCATTCCTCTGTCTCCCCCCTTTTTCACTTTCCTCTTCT
TCTTATCTTTCATGTTCCGACTCTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTAGAGAATGGACATATGCTATGAGGTAAATATCAAGAAATCCC
ATCAGAAGCCAGGGCTAGCCTACTGGGCTTGGCTTTATACTTGTTTTTTT
TTTTTTTCTTTTGAAGACAGGGCCTCAGTCTGTAGCTGTAAATGGCTTGG
AACTCACTGTGTAGACCGTGGGGGCCTCGAAGTCACAAAGATCTGCCTGC
CTCTGCCTCTCAAGGGCTGGCATTAAGGATGTAGGTTGCCACCATCACTG
TTTATCAGTCCCTAGGTGTCTGCACCGCCATCGNGGTTTAGGTGAAATCC
CCNGNGCAATCCCTCTTCTGATGCAGACTGCAAGGGGGTGCCCCCCCCCC
AAACAANTATGAATAACGGGTGGTGAGGGGGTCCCTCACCTTCCTTATTT
CCAATAATCCTCCTAACCTATATCGTTTGGATTCTCTCTCCTCTACCTTT
ACCGTCCTGGTACCACACCGCTCCTCTAATTTCATCCCATTTCCCACACT
TAAGTACCAATATTGTGCATGTTACGCTCCCTTACCCCCTTATCCTTTAC
CCCCCCTTTATTCCCCCCCGTATTCTCCCGCTGATCTAACCTCCCCTCCA
TGCTATTTTTTATTTTTCCCCTTCTTCCTCCCCCCCTTGACTTCCCCCTC
CTTTACCCCTTTTTATAAACACCCCCGCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_i16.b1 MSMg01no308_i16.b1 CHROMAT_FILE:
MSMg01no308_i16.b1 PHD_FILE: MSMg01no308_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:53 2005
         (375 letters)



>mm_chr3_137687962_137688736
          Length = 775

 Score =  634 bits (328), Expect = 0.0
 Identities = 355/364 (97%), Gaps = 1/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgccctatacctcacaccaggacaaattctggcctgtagaccaaacaaacccg 64
           |||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 677 gaattcctgcccta-acatcacaccaggacaaattctggcctgtaaaccaaataaacccg 619

                                                                       
Query: 65  ttctactgatagctcctttggatcacagtgtttcatcagagcaacagaaagaaaagcaga 124
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttctactgagagctgctttggatcacagtgtttcatcagagcaacagaaagaaaagcaga 559

                                                                       
Query: 125 agagcattcaatttgtgtcaagtgcttttgaagagatgtaatattcatatgtatacagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agagcattcaatttgtgtcaagtgcttttgaagagatgtaatattcatatgtatacagaa 499

                                                                       
Query: 185 acccacaagcctcatttttctagaaataatagcattcacagcgatgtcagataaatccca 244
           |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 498 acccacaagcctcattttgctagagataatagcattcacagtgatgtcagataaatccca 439

                                                                       
Query: 245 ccttaacctacccatattggacagaataataaagactgacattatatttccttccaaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccttaacctacccatattggacagaataataaagactgacattatatttccttccaaccc 379

                                                                       
Query: 305 ttatcctacatgttgcaaaattctaatctctctcctcatgcaggcatcttatgtctgcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttatcctacatgttgcaaaattctaatctctctcctcatgcaggcatcttatgtctgcct 319

               
Query: 365 attg 368
           ||||
Sbjct: 318 attg 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)