BAC Information

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BAC

Clone NameMSMg01-308K01
Chromosome3 (Build37)
Map Location 80,612,635 - 80,613,081
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem144, 1110032E23Rik, EG626797, Gria2
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308K01.T7 (MSMg01no308_k01.b1)MSMg01-308K01.TJ (MSMg01no308_k01.g1)
ACCAG432655AG432656
length715737
length of high quality
(start - end)
327 (22 - 348)446 (130 - 575)
definitionCHROMAT_FILE: MSMg01no308_k01.b1 PHD_FILE: MSMg01no308_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:00 2005CHROMAT_FILE: MSMg01no308_k01.g1 PHD_FILE: MSMg01no308_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCATTATATCGAGAGGATCCGCGGAATTCTTAGGCAAATCGGATGGA
TTTGGAAGATATCATCCCAAGTGAGGTAACCCAATCACAAAAGAACACAC
ATGATGTGCACTCACTGATAAGTGGCCCAGAAACTCAGAATACCCAAGAT
ATAATTTGCAAACACATGAAAATTAAGAAGGAAGACCAAAGTGTGGATAC
TTCGTTCCTTCCTAGAATGGTGAACAAAATACCCATGGAAGGAGTTACAG
AGACAAACTTCAGAGCTGAGACAGAAGGAAGGACCATCCAGAGACTGCCC
CATCCAGGGATCCATCCCATAAACAACGACCAAACCCAGTACTATTGCAT
ATGTCAACAAAATTTTGCTGACAGGACCCTGTTATAGGTATCTTTTGTCC
CCCCACGCCAGCGTCCGGCAAATACAGAAGTGGATGCCCCCAGCTCTCTA
TTCGATGGACCACAGGTCCCCCAACGAACGAGATATTAGAAATTACCCAA
GGACTTGAAGGGCCCTGTTCCCCTACAGAACGAACTTCTATATGAACTAG
CCCGTATCCCACAGTTCACGCCTCTAGTTGCCTATGAAGTAGATGATGGC
CTACTTGGTCTTCACTGCCAGGACAGGCCCTTCCTCCTTGATAATTATAT
GTCCTTCGACTGGCTATTGCATGTTTTCCCACCCGCTCCGCGTGTTTTTG
TTTCCTCCTCCCCCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTATTTGTCCTGTTGGTACAAGT
AATCTCACTTGACATATGTTTTCACCCAGTCAGCTTTTTATTTTTTTATT
TTTTTTATTTTTCCTTCTTCCTCTTAATGGCAGCATACTATTTCATTGTG
TGTTTGTGTCATTTTTATATCTTCATCTGAAACTTGTTTTGTTTTACTAT
CTCTATAACTAGCCTATTTTCACTGTAACTATTATAAACACAGAGTGTTA
CTAGCTCTTTCAAATATTCACTCGAATTCTTCTCCATATAAACTCAAGGG
AGGCATTGCTCCTTTTTTGTATGTCGTAGGGAGAAAGTCCCATACTATTG
CTCATAGGGCCAGTATCATCCCCCCCCCCTGTTGACAGTATTCAGGGATG
CCAGAAGCTCCTTCTAGTTACCACCAACAAAATTATGCTCTTTGGCAGGA
GCAAAACTTTTTATAAAACACCAAACATTACTTTTAATGACTTCATGTAG
ATTACTTTCATAACATGAGGACAAAAAAAATGACCAAAACAACCTAAGCA
ATGAACGATGCTTTGTATTGGCTTCCAGTATCCCAGTTCATCATGATGGG
CAATTCATGTACTGGTACTTGTGACCGCTTGTCCCATTGTTTTTACAGTC
AGGAAGGAAAAATGGATGCTTGCTGATGTTCATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_k01.g1 MSMg01no308_k01.g1 CHROMAT_FILE:
MSMg01no308_k01.g1 PHD_FILE: MSMg01no308_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:00 2005
         (446 letters)



>mm_chr3_80612402_80613247
          Length = 846

 Score =  781 bits (404), Expect = 0.0
 Identities = 436/454 (96%), Gaps = 15/454 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagctttttattttttta-ttttttttatttttccttcttcctcttaatggcagcatac 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcagctttttatttttttatttttttttatttttccttcttcctcttaatggcagcatac 621

                                                                       
Query: 60  tatttcattgtgtgtttgtgtcatttttatatcttcatctgaaacttgttttgttttact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatttcattgtgtgtttgtgtcatttttatatcttcatctgaaacttgttttgttttact 561

                                                                       
Query: 120 atctctataactagcctattttcactgtaactattataaacacagagtgttactagctct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atctctataactagcctattttcactgtaactattataaacacagagtgttactagctct 501

                                                                       
Query: 180 ttcaaatattcactcgaattcttctccatataaactcaagggaggcattgctcctttttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcaaatattcactcgaattcttctccatataaactcaagggaggcattgctcctttttt 441

                                                                       
Query: 240 gtatgtcgtagggagaaagtcccatactattgctcatagggccagtatcat----c---c 292
           |||||||||||||||||||||||||||||||||||||| ||||||||||||    |   |
Sbjct: 440 gtatgtcgtagggagaaagtcccatactattgctcatatggccagtatcattttactttc 381

                                                                       
Query: 293 cccccccctgttgacagtattcagggatgccagaagctccttctagttaccaccaacaaa 352
           |       ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 c-------tgttgacagtattcagggatgccagaagctcgttctagttaccaccaacaaa 328

                                                                       
Query: 353 attatgctctttggcaggagcaaaactttttataaaacaccaaacattacttttaatgac 412
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 327 attatgctctttggcaggagcaaaactttttatgaaacaccaaacattacttttaatgac 268

                                             
Query: 413 ttcatgtagattactttcataacatgaggacaaa 446
           ||||||||||||||||||||||||||||||||||
Sbjct: 267 ttcatgtagattactttcataacatgaggacaaa 234


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)