BAC Information

Click to search

BAC

Clone NameMSMg01-308L14
Chromosome3 (Build37)
Map Location 112,832,364 - 112,832,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717, Utp14B-ps
Downstream geneEG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308L14.T7 (MSMg01no308_l14.b1)MSMg01-308L14.TJ (MSMg01no308_l14.g1)
ACCAG432715AG432716
length739747
length of high quality
(start - end)		322 (46 - 367)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no308_l14.b1 PHD_FILE: MSMg01no308_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:07 2005CHROMAT_FILE: MSMg01no308_l14.g1 PHD_FILE: MSMg01no308_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGATTGCCAGCTCACTGTCATACTTCTCTGGCTGTGAAATGAG
TTCCTTGGTCAGAAGCAACACTGTGTGGAATACCATGACGATAGATAAGA
TAAAATATTGGAGTAAAATTATATTTTAAACAGACCACACATCATACATA
TGGTCTGTTTCCTCATTAGTATGGCATACATATTTGTGCAATAAAATTTG
TGTTAGGTCCTTATGTTTTTTAGTCAGGAGACAGAAGGAATATTGAGGAA
ATAATGCACTAAATTCTGTGATAGTGTTTAGAAATAAAAGAGGAATTATG
GATTTTCTTCTGTTTGTTTAAAATGCCCCCAGGAGGGAGGGCTCTTCAAC
TTATTCTGAGCCCACGCCCATGACAGCTATCTCAGTGAGGTATGTACAAT
CTTTACAGCAAACAATTAAAGTCCTTCACTGTAGGGAAACCAATAATATT
TTTAGATGTGTTTGGTACTTTCTTTAACCTGTAGAGAAATATAGACAATG
GGAATCATGCCATCTAGAGACAAGAACAATTTAAACTGAGCCCACTCATC
ATGGAAGCATTTAATTCACAATCTTCACATAATTTCCTTTTATTTAAGTC
ATTATTAAGAAATATCATCCTGCTTATCACATGTAAATTTTAAGCTTCTC
CAGTATTGGCTTGGAAACCTACTGAACACTTTAGAGACT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTAAACACAACCAAACAGGTG
AAGAAATTGAACAAAACCACCCAGGATCTAAAAATGGAACTAGAAACAAT
AAAGAAATCACAAAGGAAGACAACCCTGGAGATAGAAAACCTAGAAAGGA
GATCAGGAGTCATAGATGCAAGCATTACCAATATAATACAAGAGATAGAA
GAGAGAACCTCAGATGCTGAAGATACAGTAGAAAACATTGACACAATAAT
CAAAGAAAATGTAAAGTGCAAAAAGCTCTTAACTCAAAACATCCAGGAAA
TCCAGGACACAATGAATTTTTTTTACCCACCCACCCCCCGTATAGAAGAG
AGTGAAGATTCCCAACTTAAACGCCCAGTACATATATTCAACAAAATTAC
AGAAGAAAACTTCCCTAACCTAAAGAAAGATATGTCCATGAACATACAAG
AAATGTACAGAACCCAAAAGAGATTACACCAGTAAAGAAATTCCTCCTGT
CATATAACAGTCAAAATCCCAAATGCAGAAAACAAAGAAAGAATATTAAA
AGCAGTTAGGGGAAAAGGTTAAGTAACATATAAAGGCAGACCTATCAGAA
CTACAATAGACTTCTCAACAGAGATTAGGAAAGCTAGAAGATCCTGGAAA
TGTCATCCAGACTCGAAGAGAACATAAATGCCAGCCCAGGCTACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_l14.b1 MSMg01no308_l14.b1 CHROMAT_FILE:
MSMg01no308_l14.b1 PHD_FILE: MSMg01no308_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:07 2005
         (322 letters)



>mm_chr3_112832160_112832881
          Length = 722

 Score =  563 bits (291), Expect = e-165
 Identities = 308/315 (97%), Gaps = 4/315 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgat--tgccagctcactgtcatacttctctggctgtgaaatgagttccttg 62
           ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgatcgtg--agctcactgtcatacttctctggctgtgaaatgagttccttg 262

                                                                       
Query: 63  gtcagaagcaacactgtgtggaataccatgacgatagataagataaaatattggagtaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtcagaagcaacactgtgtggaataccatgacgatagataagataaaatattggagtaaa 322

                                                                       
Query: 123 attatattttaaacagaccacacatcatacatatggtctgtttcctcattagtatggcat 182
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 323 attatattttaaacagaccacaaatcatacatatggtctgtttcctcattagtatggcat 382

                                                                       
Query: 183 acatatttgtgcaataaaatttgtgttaggtccttatgttttttagtcaggagacagaag 242
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acatatttgtgcaataaaatgtgtgttaggtccttatgttttttagtcaggagacagaag 442

                                                                       
Query: 243 gaatattgaggaaataatgcactaaattctgtgatagtgtttagaaataaaagaggaatt 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 443 gaatattgaggaaataatgcactaaattctgtgaaagtgtttagaaataaaagaggaatt 502

                          
Query: 303 atggattttcttctg 317
           |||||||||||||||
Sbjct: 503 atggattttcttctg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |