BAC Information

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BAC

Clone NameMSMg01-309C01
Chromosome3 (Build37)
Map Location 40,891,077 - 41,046,740
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309C01.T7 (MSMg01no309_c01.b1)MSMg01-309C01.TJ (MSMg01no309_c01.g1)
ACCAG433008AG433009
length760736
length of high quality
(start - end)
321 (46 - 366)287 (328 - 614)
definitionCHROMAT_FILE: MSMg01no309_c01.b1 PHD_FILE: MSMg01no309_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:37 2005CHROMAT_FILE: MSMg01no309_c01.g1 PHD_FILE: MSMg01no309_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,046,422 - 41,046,740)(40,891,077 - 40,891,363)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTTCTTCTGTTCCCATTGCCTTCCGTTTGTAGACATCTCTATG
TTGAAGGGCCTTGCAGCTTGCAGACGTCTGAGTGATTACTCCTCCAAATT
AAGGTCAACAGCAAGACCTGCCTTGCAATAAGCTAGCACTCCAGAAACCA
GTGTGTCCTCACCATCTTGTGGTAGAGCCTAGAGAAAGACATCGGGCTCA
GAGTCTCCCTTCACCAGCTGAAGCTCACTAGGAAGTTTACTTCAATTGAA
TGTCCAAATTTTTCCAATTTAATCATTGCAGTGGGTCCTCCCTCAGTTAA
GAACTTTTAGTTAAAGATTTTTTTTGACACCCACCCCAGGGGGGCTTACA
AGATGGTACGGCTGATCCACGACCCCGGCGGAGAAATACTCGTGACTATT
TTCATCTAAAACCATACCTTGTTTCCAGTTCGACACCTGAGTGACTCTAC
TCAGTTCTCTGCTGATTTAATGCATACTCCGCGTTCTATCACTTTCACTG
TCCTCTCCTGTACCTTGTTATATACACTGTTCTATTATATGCCTTTTTAC
CGACCCCCCCATGTTTTGTTTGTTTTTATTTCCTCCCATGCCTCCGTTCT
TTACCCCAATATTATGCTTATTGATTTCACTCCCCTCACCCCTTCCTTTT
ATAACTATTTTCCTCCCCTTTTTTCTTCCCCTGGTAATATTCTTCCCCTC
AATTACATTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTCTATTTTAGGGGAAACATT
ACTTTATTGTTGAAGACAGGTCCTGATATACAGAAAAGGAAAATTGATCC
TCTATTCCAGGCTTGCCAGTGAATTTCCAGATGTGTGAGCTTGGGACTTA
TACATCCCACCATCCTCCTCTCCTTTCCTTTCTCTTCCCTTCTGGGAGGC
AGATGTGTGTATTTCTTTTTCAGTTACCTCATACCTCAAGTTTGATAGGG
GATTGCTCCTGCTGGGGAATTCCTCTGCAAACTTACTGGGATCTCTGTGG
GGAGGAAAGCTTCTGAACTGGGAGCTAAGTTCACTTCCAGAGACCAACAA
CACCCAATGTTTGAACTTTAATTCAGTGGTCAGATAGCTCACTGTTGGAT
GTGATAATTTTGGACTTTAACACAAGTTGGTTCTGATTACTTTGAGCTGT
AATTTAGAAAAAAGTACTTTGATCTCTAATTTCTCTTGGTAAACCTCATA
TTGAGAGAGGCACAAAGTTAAATTGGGTACAAATTTTGACAGTTATCTAA
GTTTTGGAGTTTTTTTTTTCTAGAATGATTATTATGGACAAGCTAGAAGG
ACATCATTTGAGATGGCAATACAACAGGTCATGAACTTTGGGCACAAACT
GACTAAGGCATTGTTCTGACCTATTCACGCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_c01.b1 MSMg01no309_c01.b1 CHROMAT_FILE:
MSMg01no309_c01.b1 PHD_FILE: MSMg01no309_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:37 2005
         (321 letters)



>mm_chr3_41046220_41046940
          Length = 721

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattccttttcttctgttcccattgccttccgtttgtagacatctctatgttgaagg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cggaattccttttcttctgttcccattgccttccgtttgtagacatctctatgttgaagg 462

                                                                       
Query: 63  gccttgcagcttgcagacgtctgagtgattactcctccaaattaaggtcaacagcaagac 122
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 461 gccttgcagcttgcagacgtctgagtgattactcctccaaattaaggtcagcagcaagac 402

                                                                       
Query: 123 ctgccttgcaataagctagcactccagaaaccagtgtgtcctcaccatcttgtggtagag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctgccttgcaataagctagcactccagaaaccagtgtgtcctcaccatcttgtggtagag 342

                                                                       
Query: 183 cctagagaaagacatcgggctcagagtctcccttcaccagctgaagctcactaggaagtt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cctagagaaagacatcgggctcagagtctcccttcaccagctgaagctcactaggaagtt 282

                                                                       
Query: 243 tacttcaattgaatgtccaaatttttccaatttaatcattgcagtgggtcctccctcagt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tacttcaattgaatgtccaaatttttccaatttaatcattgcagtgggtcctccctcagt 222

                              
Query: 303 taagaacttttagttaaag 321
           |||||||||||||||||||
Sbjct: 221 taagaacttttagttaaag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no309_c01.g1 MSMg01no309_c01.g1 CHROMAT_FILE:
MSMg01no309_c01.g1 PHD_FILE: MSMg01no309_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:37 2005
         (287 letters)



>mm_chr3_40890877_40891563
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaacttactgggatctctgtggggaggaaagcttctgaactgggagctaagttcacttc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacttactgggatccctgtggggaggaaagcttctgaactgggagctaagttcacttc 260

                                                                       
Query: 61  cagagaccaacaacacccaatgtttgaactttaattcagtggtcagatagctcactgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagaccaacaacacccaatgtttgaactttaattcagtggtcagatagctcactgttg 320

                                                                       
Query: 121 gatgtgataattttggactttaacacaagttggttctgattactttgagctgtaatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtgataattttggactttaacacaagttggttctgattactttgagctgtaatttag 380

                                                                       
Query: 181 aaaaaagtactttgatctctaatttctcttggtaaacctcatattgagagaggcacaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaagtactttgatctctaatttctcttggtaaacctcatattgagagaggcacaaag 440

                                                          
Query: 241 ttaaattgggtacaaattttgacagttatctaagttttggagttttt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaattgggtacaaattttgacagttatctaagttttggagttttt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)