BAC Information

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BAC

Clone NameMSMg01-309I22
Chromosome3 (Build37)
Map Location 19,959,311 - 19,959,667
singlet/doubletsinglet
Overlap geneHltf
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3
Downstream geneGyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309I22.T7 (MSMg01no309_i22.b1)MSMg01-309I22.TJ (MSMg01no309_i22.g1)
ACCAG433312AG433313
length725741
length of high quality
(start - end)
324 (46 - 369)348 (394 - 741)
definitionCHROMAT_FILE: MSMg01no309_i22.b1 PHD_FILE: MSMg01no309_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:10 2005CHROMAT_FILE: MSMg01no309_i22.g1 PHD_FILE: MSMg01no309_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAATAGACTGAATCAGAAAAGAAATTCCTCCCGACACATAATAA
TCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGG
GAAAAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAG
ACTTTTCGCCAGAGACTATGAAAGCCAGAAGATCCTGGACAGATGTTAAA
CAGATCCTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAA
ACCCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCA
AATTCACACATTATCTCTCTATGAATCCCACCCTTCCAAGGATAATAACA
GAAAAAAAAATAACAAGGACGGACACCATGTCCTAGAAAAAGCAAGAAAG
TAATCCTTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAA
TTCTAACAACAAAAATAATAGCAAGTAACAATTACTTTTCCTTAATATCT
CAATATCAATGAACTCACTTACCCAATAAAAAGACATAGACTAATAGACC
GGCTACACAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTC
AGGGAAAAAGACAGACACTACCTCAGAGTGAAAGACTGGANAACAATTTT
CCAAGCAAATGGTCTGAAGAAACAA
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACATTATTCCTCCAGATGAC
TTCCTAACGAGTGATGAAGAGCAAGATCTGGTTTTATTTGGAACTATGAG
AGGACAAGTTGTTGGACTACGCTATTACACAGGAGTTGTAAGTAAAAGAT
TAGATAATAAAATTGTGGCATGTCTATGGTTTTAACAGTAAGTTATAGTA
AAAGGTGATGTATACAATGAATGTTTTACTTTGAATGAAAGGCTAGTCAT
AAATACCTTGACTAACTGATTAACTTCTTACTTTTCTCCTATGCTTATAG
TTTATAAAGCACTTTTGCCTCTTTTATTTGGCCCTCGCGATCTACTGAGG
AACGTGGTAAATTTAAGAAATGACTCCCCACCCATCATGTTTTACATTAG
GTTATCCATTTTTGTAATAAAAACAGTCCGTGTTCTTTCTTATGTGTTCC
TGTTCTCTGAAATGAATGTATGTGAAAATGTGTGTGAGAGAAAGAAAATG
GACAGATTGAGAATATATATATAATTTTCTTTGAACAATAATCTTTATTA
AGGGCATCTTTGTTATTTAGTAATATAACTAATGATATTTAATTTATTAT
GAGAAAGTTTCTAACAAAATGAGGATAAGATTCAATGGTTAGCAAGTATT
TTCTATTTTTGCTTTCTTTCTTTTCTTTTCTTTCCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_i22.g1 MSMg01no309_i22.g1 CHROMAT_FILE:
MSMg01no309_i22.g1 PHD_FILE: MSMg01no309_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:10 2005
         (348 letters)



>mm_chr3_19959121_19959870
          Length = 750

 Score =  528 bits (273), Expect = e-154
 Identities = 331/357 (92%), Gaps = 12/357 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaggaacgtggtaaatttaagaaatgactccccacccatcatgttttacattaggtt 60
           |||||||||||||||||||||||||||||||| |  | |||||||||||| |||||||||
Sbjct: 191 actgaggaacgtggtaaatttaagaaatgacttcaaatccatcatgttttgcattaggtt 250

                                                                       
Query: 61  atccatttttgtaataaaaacagtccgtgttctttcttatgtgttcctgttctctgaaat 120
           || |||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 251 attcatttttgtagtaaaaacagtccttgttctttcttatgtattcctgttctctgaaat 310

                                                                       
Query: 121 gaatgtatgtgaaaatgtgtgtgagagaaagaaaatggacagattgagaatatatatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaatgtatgtgaaaatgtgtgtgagagaaagaaaatggacagattgagaatatatatata 370

                                                                       
Query: 181 ----------attttctttgaacaataatctttattaagggcatctttgttatttagtaa 230
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tatatatataattttctttgaacaataatctttattaagggcatctttgttatttagtaa 430

                                                                       
Query: 231 tataa--ctaatgatatttaatttattatgagaaagtttctaacaaaatgaggataagat 288
           |||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 431 tataattctaatgatatttaatttattatgagaaagtttctaacaaaatgagaataagat 490

                                                                    
Query: 289 tcaatggttagcaagtattttctatttttgctttctttcttttcttttctttccttt 345
           ||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||||
Sbjct: 491 tcaatggttagcaagtattttctatttttgcttgctttctcttctcttcttttcttt 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 750
Length adjustment: 9
Effective length of query: 339
Effective length of database: 741
Effective search space:   251199
Effective search space used:   251199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)