MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-311D08
Chromosome	3 (Build37)
Map Location	104,383,153 - 104,586,910
singlet/doublet	doublet
Overlap gene	Slc16a1, EG624251, 7530404M11Rik, Ppm1j
Upstream gene	Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622, Lrig2
Downstream gene	Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a
Link	Open Mouse BAC browser

Click to get alignment info.

name	Syt6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54524 MGI:1859544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atg4a-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102926 MGI:3615624
definition	gene_synonym : Apg4a; Apg4a-ps; Atg4al-ps; Autl2 note : autophagy-related 4A (yeast), pseudogene pseudo : _no_value

name	LOC100043538 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043538
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Olfml3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99543 MGI:1914877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hipk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15257 MGI:1314873
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dclre1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140917 MGI:2156057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ap4b1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67489 MGI:1337130
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm566 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229672 MGI:2685412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 30 ESTs, 4 Proteins

name	Ptpn22 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19260 MGI:107170
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668452 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668452
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Rsbn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229675 MGI:2444993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phtf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18685 MGI:1332671
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Magi3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99470 MGI:1923484
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433634 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433634 MGI:3648205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668622 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668622
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Lrig2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269473 MGI:2443718
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc16a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20501 MGI:106013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG624251 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:624251 MGI:3644007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 215 ESTs, 26 Proteins pseudo : _no_value

name	7530404M11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329731 MGI:3046463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppm1j (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71887 MGI:1919137
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhoc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11853 MGI:106028
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mov10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17454 MGI:97054
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Capza1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12340 MGI:106227
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	St7l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229681 MGI:2386964
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043572 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043572
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 375 ESTs, 3 Proteins pseudo : _no_value

name	Wnt2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22414 MGI:1261834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cttnbp2nl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80281 MGI:1933137
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930564D02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75269 MGI:1922519
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	1700095B22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78635 MGI:1925885
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Kcnd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56543 MGI:1928743
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ddx20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53975 MGI:1858415
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6530418L21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109050 MGI:1923497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rap1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109905 MGI:97852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Syt6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111038121 GeneID:54524 MGI:1859544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin VI transcript_id : NM_018800.3

name	LOC100043538 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251421 GeneID:100043538
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043538 transcript_id : XM_001480691.1

name	Olfml3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86439988 GeneID:99543 MGI:1914877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactomedin-like 3 transcript_id : NM_133859.2

name	Hipk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754195 GeneID:15257 MGI:1314873
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeodomain interacting protein kinase 1 transcript_id : NM_010432.1

name	Dclre1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778906 GeneID:140917 MGI:2156057
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) transcript_id : NM_001025312.1

name	Dclre1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778965 GeneID:140917 MGI:2156057
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA cross-link repair 1B, PSO2 homolog (S. cerevisiae) transcript_id : NM_133865.2

name	Ap4b1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385705 GeneID:67489 MGI:1337130
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adaptor-related protein complex AP-4, beta 1 transcript_id : NM_026193.1

name	Ptpn22 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679554 GeneID:19260 MGI:107170
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 22 (lymphoid) transcript_id : NM_008979.1

name	Rsbn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:67906200 GeneID:229675 MGI:2444993
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : rosbin, round spermatid basic protein 1 transcript_id : NM_172684.2

name	Phtf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305380 GeneID:18685 MGI:1332671
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : putative homeodomain transcription factor 1 transcript_id : NM_013629.1

name	Magi3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129792 GeneID:99470 MGI:1923484
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : membrane associated guanylate kinase, WW and PDZ domain containing 3 transcript_id : NM_133853.2

name	EG433634 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701495 GeneID:433634 MGI:3648205
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG433634 transcript_id : NM_001013805.1

name	Lrig2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68299751 GeneID:269473 MGI:2443718
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine-rich repeats and immunoglobulin-like domains 2 transcript_id : NM_001025067.1

name	Slc16a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802927 GeneID:20501 MGI:106013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 1 transcript_id : NM_009196.3

name	7530404M11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54607129 GeneID:329731 MGI:3046463
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 7530404M11 gene transcript_id : NM_183224.2

name	Ppm1j (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114205423 GeneID:71887 MGI:1919137
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1J transcript_id : NM_027982.2

name	Rhoc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680727 GeneID:11853 MGI:106028
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ras homolog gene family, member C transcript_id : NM_007484.1

name	Mov10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678919 GeneID:17454 MGI:97054
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Moloney leukemia virus 10 transcript_id : NM_008619.1

name	Capza1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33468886 GeneID:12340 MGI:106227
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : capping protein (actin filament) muscle Z-line, alpha 1 transcript_id : NM_009797.1

name	St7l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254198 GeneID:229681 MGI:2386964
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppression of tumorigenicity 7-like transcript_id : NM_153091.2

name	Wnt2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130343 GeneID:22414 MGI:1261834
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : wingless related MMTV integration site 2b transcript_id : NM_009520.3

name	Cttnbp2nl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364888 GeneID:80281 MGI:1933137
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CTTNBP2 N-terminal like transcript_id : NM_030249.3

name	4930564D02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251347 GeneID:75269 MGI:1922519
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 4930564D02 gene transcript_id : XM_898342.3

name	1700095B22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251349 GeneID:78635 MGI:1925885
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 1700095B22 gene transcript_id : XM_001479528.1

name	Kcnd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86991433 GeneID:56543 MGI:1928743
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, Shal-related family, member 3 transcript_id : NM_001039347.1

name	Kcnd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9910301 GeneID:56543 MGI:1928743
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium voltage-gated channel, Shal-related family, member 3 transcript_id : NM_019931.1

name	Ddx20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980856 GeneID:53975 MGI:1858415
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 transcript_id : NM_017397.2

name	6530418L21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328420 GeneID:109050 MGI:1923497
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6530418L21 gene transcript_id : NM_175398.3

name	Rap1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365908 GeneID:109905 MGI:97852
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAS-related protein-1a transcript_id : NM_145541.4

name	Syt6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906485 GeneID:54524 MGI:1859544
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 product : synaptotagmin 6 protein_id : NP_061270.2

name	LOC100043538 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251422 GeneID:100043538
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480741.1

name	Olfml3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86439989 CCDS:CCDS17693.1 GeneID:99543 MGI:1914877
definition	codon_start : 1 product : olfactomedin-like 3 protein_id : NP_598620.2

name	Hipk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754196 GeneID:15257 MGI:1314873
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016607 - nuclear speck [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] [Evidence ISS]; GO:0016605 - PML body [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0019901 - protein kinase binding [Evidence IPI]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI]; GO:0042771 - DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis [Evidence IGI]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0043388 - positive regulation of DNA binding [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS] [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007224 - smoothened signaling pathway [Evidence IGI]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy function : phosphorylates homeodomain transcription factors product : homeodomain-interacting protein kinase 1 protein_id : NP_034562.1

name	Dclre1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778966 CCDS:CCDS17694.1 GeneID:140917 MGI:2156057
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006289 - nucleotide-excision repair [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : DNA cross-link repair 1B, PSO2 homolog isoform a protein_id : NP_598626.2

name	Dclre1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778907 CCDS:CCDS17695.1 GeneID:140917 MGI:2156057
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006289 - nucleotide-excision repair [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : DNA cross-link repair 1B, PSO2 homolog isoform b protein_id : NP_001020483.1

name	Ap4b1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385706 CCDS:CCDS17696.1 GeneID:67489 MGI:1337130
definition	GO_component : GO:0005905 - coated pit [Evidence IEA]; GO:0005802 - Golgi trans face [Evidence TAS] [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0006886 - intracellular protein transport [Evidence TAS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0016192 - vesicle-mediated transport [Evidence TAS] codon_start : 1 exception : mismatches in translation note : AP-4 beta-4 product : adaptor-related protein complex AP-4, beta 1 protein_id : NP_080469.1

name	Ptpn22 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679555 GeneID:19260 MGI:107170
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IMP]; GO:0030217 - T cell differentiation [Evidence IMP]; GO:0050852 - T cell receptor signaling pathway [Evidence IMP] codon_start : 1 note : PEST domain-enriched tyrosine phosphatase; protein tyrosine phosphatase, non-receptor type 8 product : protein tyrosine phosphatase, non-receptor type 22 (lymphoid) protein_id : NP_033005.1

name	Rsbn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:67906201 CCDS:CCDS17697.1 GeneID:229675 MGI:2444993
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : rosbin, round spermatid basic protein 1 protein_id : NP_766272.2

name	Phtf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305381 CCDS:CCDS17698.1 GeneID:18685 MGI:1332671
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation function : putative homeobox protein product : putative homeodomain transcription factor 1 protein_id : NP_038657.1

name	Magi3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527074 CCDS:CCDS17699.1 GeneID:99470 MGI:1923484
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : membrane-associated guanylate kinase-related (MAGI-3) protein_id : NP_598614.1

name	EG433634 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701496 GeneID:433634 MGI:3648205
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC433634 protein_id : NP_001013827.1

name	Lrig2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68299752 CCDS:CCDS17701.1 GeneID:269473 MGI:2443718
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : leucine-rich repeats and immunoglobulin-like domains 2 protein_id : NP_001020238.1

name	Slc16a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677995 CCDS:CCDS17702.1 GeneID:20501 MGI:106013
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0015355 - monocarboxylate porter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0015711 - organic anion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : monocarboxylate transporter 1 product : solute carrier family 16, member 1 protein_id : NP_033222.1

name	7530404M11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147302 GeneID:329731 MGI:3046463
definition	codon_start : 1 product : TAFA3 protein protein_id : NP_899047.1

name	Ppm1j (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114205424 CCDS:CCDS17703.1 GeneID:71887 MGI:1919137
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0015071 - protein phosphatase type 2C activity [Evidence IDA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IDA] codon_start : 1 note : protein phosphatase 2a, catalytic subunit, zeta isoform; protein phosphatase 2C zeta product : protein phosphatase 1J protein_id : NP_082258.2

name	Rhoc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680728 CCDS:CCDS17704.1 GeneID:11853 MGI:106028
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : aplysia ras-related homolog 9 (RhoC); ras homolog 9 (RhoC) product : ras homolog gene family, member C protein_id : NP_031510.1

name	Mov10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678920 GeneID:17454 MGI:97054
definition	codon_start : 1 exception : mismatches in translation product : Moloney leukemia virus 10 protein_id : NP_032645.1

name	Capza1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33468887 GeneID:12340 MGI:106227
definition	GO_component : GO:0008290 - F-actin capping protein complex [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0051016 - barbed-end actin filament capping [Evidence IEA] codon_start : 1 exception : mismatches in translation note : capping protein alpha 1 product : capping protein (actin filament) muscle Z-line, alpha 1 protein_id : NP_033927.1

name	St7l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346515 CCDS:CCDS17705.1 GeneID:229681 MGI:2386964
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : tumor suppressor ST7 like product : suppression of tumorigenicity 7-like protein_id : NP_694731.1

name	Wnt2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543958 CCDS:CCDS17706.1 GeneID:22414 MGI:1261834
definition	GO_function : GO:0005102 - receptor binding [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007267 - cell-cell signaling [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0007223 - frizzled-2 signaling pathway [Evidence IEA]; GO:0009887 - organ morphogenesis [Evidence TAS]; GO:0006457 - protein folding [Evidence IEA]; GO:0007165 - signal transduction [Evidence TAS]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 product : wingless related MMTV integration site 2b protein_id : NP_033546.2

name	Cttnbp2nl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384814 CCDS:CCDS17707.1 GeneID:80281 MGI:1933137
definition	codon_start : 1 product : CTTNBP2 N-terminal like protein_id : NP_084525.1

name	4930564D02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251348 GeneID:75269 MGI:1922519
definition	codon_start : 1 product : hypothetical protein LOC75269 protein_id : XP_903435.3

name	1700095B22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251350 GeneID:78635 MGI:1925885
definition	codon_start : 1 product : hypothetical protein LOC78635 protein_id : XP_001479578.1

name	Kcnd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910302 CCDS:CCDS17709.1 GeneID:56543 MGI:1928743
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; potassium channel Kv4.3L; potassium channel Kv4.3M product : potassium voltage-gated channel, Shal-related family, member 3 isoform 2 protein_id : NP_064315.1

name	Kcnd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86991434 CCDS:CCDS17708.1 GeneID:56543 MGI:1928743
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; potassium channel Kv4.3L; potassium channel Kv4.3M product : potassium voltage-gated channel, Shal-related family, member 3 isoform 1 protein_id : NP_001034436.1

name	Ddx20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980857 GeneID:53975 MGI:1858415
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA]; GO:0017053 - transcriptional repressor complex [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0043065 - positive regulation of apoptosis [Evidence IMP] codon_start : 1 exception : mismatches in translation note : DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 20 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 protein_id : NP_059093.2

name	6530418L21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328421 CCDS:CCDS17710.1 GeneID:109050 MGI:1923497
definition	GO_function : GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : hypothetical protein LOC109050 protein_id : NP_780607.2

name	Rap1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704066 CCDS:CCDS17711.1 GeneID:109905 MGI:97852
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IDA] codon_start : 1 note : GTP-binding protein SMG-P21A product : RAS-related protein-1a protein_id : NP_663516.1

name	LOC668452 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668452
definition	number : 1 pseudo : _no_value

name	LOC668622 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668622
definition	number : 1 pseudo : _no_value

name	Gm566 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94369780 GeneID:229672 MGI:2685412
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 15 ESTs, 1 Protein product : gene model 566, (NCBI), transcript variant 2 transcript_id : XR_002337.1

name	EG624251 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94369831 GeneID:624251 MGI:3644007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 215 ESTs, 26 Proteins product : predicted gene, EG624251 pseudo : _no_value transcript_id : XR_002221.1

name	LOC100043572 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251423 GeneID:100043572
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 375 ESTs, 3 Proteins product : similar to hCG1783679 pseudo : _no_value transcript_id : XR_034833.1

clone name	MSMg01-264I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361M15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-122N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184P02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-311D08.T7 (MSMg01no311_d08.b1)	MSMg01-311D08.TJ (MSMg01no311_d08.g1)
ACC	AG433774	AG433775
length	815	811
length of high quality (start - end)	271 (36 - 306)	209 (56 - 264)
definition	CHROMAT_FILE: MSMg01no311_d08.b1 PHD_FILE: MSMg01no311_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:59 2005	CHROMAT_FILE: MSMg01no311_d08.g1 PHD_FILE: MSMg01no311_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:59 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(104,586,644 - 104,586,910)	(104,383,153 - 104,383,361)
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGC AGGAGGACCAGGCCCTCCCCATAATGAGCCTGATGATGTCTTGCCTGGGT CCTCATCTCTCCGTCCCCCGTGGATATGGCAACCTTTCCTTATATCTTAC TGATCACTGCGGTCTTTAATACTTAACCCAGCACCCCTTCACTCTCTGCA TTCCCCTCATCCTAGGGAGGATGTTCCCCTTTTACGGCCACTCTCAAAGC CCTCTTCCCACTCACCTGCTGTCACCTGCGTTAGCCACATACATCTTGCC TAGCAGGTACAGTATTTTTTAGTGCACAGCAGCCCCCTTCCACTTGGAGG CCATTTTCGTAATTACCCCCCCCCCCCCCCCTGTTATGGTGAGGAAGTTT TTTTATTTTCCCCCCCCCCCCTTTAACAAAAAAAAAAAAACTATGGGGGG GGGGGGGGCGTCTCCCATCTTCGAACTGTTAATTTCAATAGCCATCCTCC CCATTTAAACCCTTCCCTTAGCACCTCGTCTCATCTCAATCAATCGTTCA CCTGCGCCATTCCTTATCTTTTCTCCCTCATTTTCTCCCCTCCGTTTTAT ATTCTCACATACCTATTTAAGTTTCCACTTTATTCTCATCTCATCCGTTT CTTCGCCCTCTCTTCCTTTATCAACTTTCCATGCCACTCTCTCTACCAAA ACTATACACACCTCTTCTACACATTACCATACTAATCTCCACTCCCATCA TATATTTATTAATTTCACCCATTCCCTCCTTTGTTATCATTCATTTCTAT TTCTCCTTTCTCTCC	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXTTTACTTTGGATCAAATCTTTAGGTTCAACAGGAATTCTTTTCCT TGGATCAGATTTTCGGGAGGAGATTGCTGCAGCTGTGGTCCAGTCTTTTG TCTTCCAGATGATTTCCAGATCGACTACTGATGCGTGTAACTTCAGGGAG TAGCAAAAGTGATGGAGTGCTTAGAGAGTTTAAGCTGATATACTCTGGCA GCTCATACAATGGGAAGAAAAGTTCATCTTATGGCAAGAAAAGCCTGCTA AATATTTTTTTTTCAGAAAAGAAATGCTGGACACAAACCAGAATTTTTTG GGTAAATTCCCAGAAGCAAGGCCCCATAATTATTTGTATATTTTGGGTTG AGGGNCCCCCCCCCCTCACAATTTNTCATCTNAAAAATGGGGGCTTTGTT CCCGGGTGCCCATTCTCTTCTCTATTTATACCGCCTCCTCTTCCCCCTTA CTTAATATATTATTTCCTTCTTTTCCCGATTCTAAAGTGTAATTCCCTCA CACCTCTGGTTTTTCTCATCTTGTCGTGCTGACCATCCACGTCCTCCTAC CAATACCCGTCCTACATTATTACTGACTATCACACCTTTTCTCTATCTTC CATTTGCCCCTATTTTTTTATGCAACTTTCTAGATTCCATTACCATTTTT TTTTTACCCATACTTTTTTATTTTTTGTTTGACCATCCTATATTCACCGT CGCACATTACTTAATCCGTTTCTTATTCCCCCCTATGTTCTCTTTAATTA TCCTCCTCCTN
quality values	Open. Hide. 11 11 21 19 27 18 17 11 12 9 8 8 18 18 30 33 33 33 33 33 36 37 39 32 35 35 39 35 39 39 28 26 17 20 22 37 34 43 42 21 21 24 29 37 42 42 33 33 22 29 32 42 50 57 50 50 54 50 50 50 47 47 57 59 57 57 57 50 50 47 47 47 41 47 44 44 57 46 54 54 57 57 57 57 57 57 57 54 57 57 59 59 59 59 68 68 68 68 59 59 57 57 57 57 57 68 68 57 57 52 43 43 35 44 44 68 68 57 57 43 43 35 35 35 50 50 50 50 50 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 43 43 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 59 59 59 57 59 57 59 59 57 57 57 57 57 57 57 52 57 57 59 57 57 57 59 59 59 59 59 68 59 59 59 57 57 57 57 47 47 43 43 43 42 42 52 52 52 57 52 52 52 57 57 57 59 59 59 59 57 52 43 43 41 50 50 57 57 59 57 44 43 35 35 35 42 42 52 52 52 57 57 57 52 43 43 35 35 35 44 43 43 43 50 44 43 44 37 32 38 25 28 32 40 40 46 44 43 43 37 43 43 39 43 43 44 37 43 37 39 39 35 32 32 41 41 30 30 20 26 19 13 13 12 22 24 21 17 11 10 10 10 17 15 20 15 15 9 9 10 14 20 23 28 23 32 23 16 12 12 12 21 23 28 28 28 28 26 18 10 8 8 8 8 8 10 10 8 8 8 6 8 8 7 7 7 7 7 7 6 8 8 8 11 13 19 19 19 18 22 32 32 14 14 10 11 11 13 10 9 9 8 8 8 10 8 8 11 11 11 11 11 9 9 9 9 14 15 14 13 10 10 8 8 8 9 9 16 18 24 26 14 14 14 10 8 9 12 12 11 10 10 7 7 7 12 11 19 18 18 18 18 31 22 14 11 10 8 8 8 8 8 10 10 11 30 28 30 32 28 31 19 10 8 8 8 8 8 10 8 9 9 8 8 6 6 8 8 8 8 8 8 8 8 6 6 8 8 12 11 11 11 11 10 10 8 8 8 8 8 10 12 19 15 15 12 6 6 6 6 8 8 10 10 10 10 8 8 8 8 8 8 9 12 12 8 8 8 10 9 9 8 10 8 8 7 9 7 8 8 6 6 8 8 11 11 10 11 11 11 12 11 11 11 12 14 13 10 10 8 8 8 8 8 8 8 9 10 11 16 9 8 8 8 10 11 12 20 12 16 12 10 9 9 9 9 9 11 16 20 8 8 7 6 6 8 6 6 6 8 6 9 12 12 9 11 11 19 17 11 11 8 8 8 8 8 8 8 8 8 10 10 8 8 10 8 8 6 6 8 8 8 9 9 15 13 10 10 8 10 8 8 8 6 6 6 6 6 6 8 8 8 6 6 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 10 9 8 10 8 8 8 8 8 9 10 10 11 10 11 11 8 8 6 6 8 6 6 6 6 10 8 7 7 7 8 13 16 8 8 6 6 8 8 9 8 8 8 8 8 10 10 10 8 8 6 6 6 6 8 8 10 8 8 8 10 10 8 8 10 8 8 8 10 8 8 8 8 8 8 8 8 10 6 6 8 8 8 8 8 8 8 15 14 14 12 15 12 12 11 10 10 6 6 6 6 9 9 8 8 8 8 8 8 10 11 11 8 8 6 6 6 8 8 6 7 6 6 8 8 6 6 8 8 8 8 8 8 8 8 10 10 9 10 10 10 8 9 8 11 11 11 11	Open. Hide. 19 24 27 19 18 18 13 14 14 18 21 27 28 34 23 23 25 22 16 12 12 12 25 21 43 43 39 36 23 21 18 18 23 36 29 37 25 25 25 30 28 33 42 50 50 51 57 57 54 48 48 57 57 57 57 59 59 54 54 54 59 44 44 24 24 14 19 21 36 32 42 48 57 57 57 57 57 57 57 68 68 68 57 57 54 57 57 57 57 57 50 57 57 59 59 57 57 57 59 47 47 32 32 28 43 32 22 22 32 44 44 57 52 42 42 33 33 33 35 44 42 50 50 50 57 41 52 43 43 42 57 52 52 52 57 52 52 52 57 43 43 43 22 22 33 44 44 57 57 52 57 57 57 57 57 57 52 52 52 45 45 57 57 57 57 57 57 57 52 52 52 52 52 52 52 52 52 52 47 47 37 37 42 43 43 35 35 38 43 50 52 50 44 35 19 19 11 16 16 32 24 15 14 14 28 32 43 43 32 32 32 43 37 35 35 35 32 18 14 14 14 18 28 33 33 42 42 43 43 43 44 46 44 44 43 42 25 30 16 16 15 27 26 35 32 36 36 31 37 32 32 35 39 42 48 40 32 22 17 17 19 21 12 12 12 15 13 17 24 21 25 16 16 11 12 16 28 30 39 39 28 28 15 14 14 18 15 15 18 22 19 15 19 17 12 15 10 10 10 10 9 9 12 12 11 16 16 15 20 18 13 9 9 10 10 10 12 18 18 12 12 11 10 10 12 13 13 28 15 14 14 14 19 24 20 26 12 12 8 10 6 9 8 19 10 7 7 7 6 6 6 6 6 6 6 6 7 8 8 8 7 3 3 3 7 7 9 8 8 8 8 8 8 10 12 12 9 9 9 9 12 10 10 16 16 18 14 13 10 10 12 12 10 10 10 10 8 8 8 8 10 7 11 3 0 3 21 16 28 28 35 36 23 9 8 8 6 8 8 9 9 9 9 3 0 3 6 6 6 6 3 0 3 12 12 15 18 19 15 16 21 18 10 10 9 9 9 10 10 10 9 9 9 6 8 6 6 6 8 8 8 10 15 15 10 10 8 8 10 9 9 8 8 6 7 10 6 8 8 8 9 9 8 8 8 8 8 8 8 11 11 11 11 11 8 8 8 8 8 6 9 9 8 8 8 8 10 6 6 8 8 9 10 8 8 8 8 8 8 8 10 10 8 10 8 8 8 8 8 8 8 8 9 9 8 8 8 8 8 8 8 6 6 8 10 9 8 8 8 8 8 10 8 10 8 6 6 6 8 8 10 9 10 10 8 8 8 12 10 10 10 8 8 8 6 6 8 6 6 8 8 8 8 8 8 8 9 9 10 9 10 10 8 10 9 10 10 10 10 9 8 8 8 8 11 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 9 11 12 8 8 8 10 8 8 11 15 16 15 8 8 8 7 7 9 10 10 8 8 8 8 8 13 14 14 12 12 8 8 6 6 8 10 9 13 10 10 9 8 8 10 8 8 8 10 8 10 22 17 15 10 9 8 8 8 8 8 8 8 8 9 11 11 12 10 15 12 9 9 9 10 13 10 15 10 8 8 8 8 8 6 6 8 6 8 10 10 8 10 11 17 22 12 12 7 7 8 10 8 9 8 8 8 8 8 8 8 8 12 12 8 10 10 10 10 12 10 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 6 6 8 8 8 8 9 9 9 9 8 8 8 8 8 8 8 11 10 8 9 8 8 8 8 8 8 15 10 10 10 8 10 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no311_d08.b1 MSMg01no311_d08.b1 CHROMAT_FILE:
MSMg01no311_d08.b1 PHD_FILE: MSMg01no311_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:59 2005
         (271 letters)



>mm_chr3_104586440_104587110
          Length = 671

 Score =  516 bits (267), Expect = e-151
 Identities = 267/267 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgcaggaggaccaggccctccccataatgagcctgatgatgtcttgcctggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattccatgcaggaggaccaggccctccccataatgagcctgatgatgtcttgcctggg 412

                                                                       
Query: 65  tcctcatctctccgtcccccgtggatatggcaacctttccttatatcttactgatcactg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcctcatctctccgtcccccgtggatatggcaacctttccttatatcttactgatcactg 352

                                                                       
Query: 125 cggtctttaatacttaacccagcaccccttcactctctgcattcccctcatcctagggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cggtctttaatacttaacccagcaccccttcactctctgcattcccctcatcctagggag 292

                                                                       
Query: 185 gatgttccccttttacggccactctcaaagccctcttcccactcacctgctgtcacctgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gatgttccccttttacggccactctcaaagccctcttcccactcacctgctgtcacctgc 232

                                      
Query: 245 gttagccacatacatcttgcctagcag 271
           |||||||||||||||||||||||||||
Sbjct: 231 gttagccacatacatcttgcctagcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no311_d08.g1 MSMg01no311_d08.g1 CHROMAT_FILE:
MSMg01no311_d08.g1 PHD_FILE: MSMg01no311_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:59 2005
         (209 letters)



>mm_chr3_104382953_104383561
          Length = 609

 Score =  389 bits (201), Expect = e-113
 Identities = 207/209 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactttggatcaaatctttaggttcaacaggaattcttttccttggatcagattttcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactttggatcaaatctttaggttcaacaggaattcttttccttggatcagattttcg 260

                                                                       
Query: 61  ggaggagattgctgcagctgtggtccagtcttttgtcttccagatgatttccagatcgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggagattgctgcagctgtggtccagtcttttgtcttccagatgatttccagatcgac 320

                                                                       
Query: 121 tactgatgcgtgtaacttcagggagtagcaaaagtgatggagtgcttagagagtttaagc 180
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tactgatgcgtgtaacttaagggagtagcaaaagtgatggagtgtttagagagtttaagc 380

                                        
Query: 181 tgatatactctggcagctcatacaatggg 209
           |||||||||||||||||||||||||||||
Sbjct: 381 tgatatactctggcagctcatacaatggg 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information