BAC Information

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BAC

Clone NameMSMg01-311N22
Chromosome3 (Build37)
Map Location 47,481,473 - 47,481,746
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311N22.T7 (MSMg01no311_n22.b1)MSMg01-311N22.TJ (MSMg01no311_n22.g1)
ACCAG434245AG434246
length759735
length of high quality
(start - end)
279 (49 - 327)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no311_n22.b1 PHD_FILE: MSMg01no311_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:50 2005CHROMAT_FILE: MSMg01no311_n22.g1 PHD_FILE: MSMg01no311_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACATATAGATGTAAAATATCAGTCAAATGTTATATTAAAATG
TAATACTAGTTTAATTCTCCCATAGCAGATGTTTAGTGGACCATTCTTCT
AGGACAAGGACCTGGGACACAGCCATAAATAACACATACACATAATCTGT
AATGATGCTTAAGGGAACAAAAACCGTATGTTTAGATTATGATAAACATT
AGTGAGAAATTCTTAATTGAGGAAGAAATGGATTTGTTGTTAGGTGCAGC
TATAAAAAAGGATACCTGGAATGATCTTTTATTCTGTAGTTTTAAAATCT
CAGCTGCAANAGAATTTCAGGGTGGNGTCCAAAAACANGACCCATATCTT
AGTTTTTTTATAGATAGNGGNTGCCCCCCCAAAATNTTATTNTGAAAAAG
GGGGCTCGCCCGGAGGGTTATTACTCCAAATGCTTTCCCGATTGTGGTAT
TGACTATACCTTAACAACAGATATGATGACTGCTACTGATTTCTGCGCAT
GATAGTCTCTCTATTTCCACATATTTAACTGCCAATTGGATAACAATAAC
GTCTGCTTTTAGTTCTCTATTTTCATGAATTTTATTGCCATATATACTTT
CTCTGCCTTCATTCAATAACCCCATTCTTTTCATTTATCCCCTACACCTT
TTATTCTTTTCTTACCCCATACCCCGATTTTTTCATAAAGTTTATTCTCC
TATCATACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATGAATATCTATTCCCATCTCC
CTAAGATCCACCTCACTGATTTCTATTGTGTTTGTATGAGCTTATAGTCA
CACCATCAATGGATGAGTTACCCTTTTACTCTACATTCTAGACAGTATGA
GCTGTTTCTTGTTTTGTTGATTTCCCAGATTCTGATGGGGATAACATAAA
ACCCAAATTTGTTTTGATGACTAAGAATTTGTCTGATGACTAAGGAGGAT
GCTTTCGATAATTTCTTCTTTAAGTGTTTCAGTGCCATTTAGAACTGAAG
TGGATGCTCAGAGTATTCNATTGTTTGCACCCCACTGCTCCCAGTGGAAG
AGCTAGAGAAAGTACCCAAAGAGCCCAACGAGACAGTAATCTTATAGGAG
GAACGACGATATGAACTAACCAGTATCCCCAGAGCTCATGTCTCTAGCTG
CATATGTAGCAGAAGATGGCCTAGTTGGCCATTACTGGGAAGAGAGGCCC
CTTGGTCTTGCAAAGATTATATGCTCCAATACAGGGGAAAGCCAGGGCCA
GGAAGTAGGAGTGAGTAGGTTGGAGAGCAGGGTTGTAGGAGGTTATAAGC
GACTTTCGGGATAGTATTTTGATTGTAAATAAGGAAATATTTAATAATTG
AAAAGACAGCCTTTAGATCCCGCACATATTAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_n22.b1 MSMg01no311_n22.b1 CHROMAT_FILE:
MSMg01no311_n22.b1 PHD_FILE: MSMg01no311_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:50 2005
         (279 letters)



>mm_chr3_47481269_47481947
          Length = 679

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatatagatgtaaaatatcagtcaaatgttatattaaaatgtaatactagttt 64
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcacctatagatgtaaaatatcagtcaaatgttttattaaaatgtaatactagttt 264

                                                                       
Query: 65  aattctcccatagcagatgtttagtggaccattcttctaggacaaggacctgggacacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattctcccatagcagatgtttagtggaccattcttctaggacaaggacctgggacacag 324

                                                                       
Query: 125 ccataaataacacatacacataatctgtaatgatgcttaagggaacaaaaaccgtatgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccataaataacacatacacataatctgtaatgatgcttaagggaacaaaaaccgtatgtt 384

                                                                       
Query: 185 tagattatgataaacattagtgagaaattcttaattgaggaagaaatggatttgttgtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagattatgataaacattagtgagaaattcttaattgaggaagaaatggatttgttgtta 444

                                             
Query: 245 ggtgcagctataaaaaaggatacctggaatgatc 278
           ||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtgcagctataaaaaaggatacctggaatgatc 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)