Query= MSMg01no312_a10.b1 MSMg01no312_a10.b1 CHROMAT_FILE:
MSMg01no312_a10.b1 PHD_FILE: MSMg01no312_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:01 2005
(678 letters)
>mm_chr3_14993305_14994382
Length = 1078
Score = 1000 bits (517), Expect = 0.0
Identities = 639/727 (87%), Gaps = 79/727 (10%)
Strand = Plus / Plus
Query: 5 gaattcacaatgtttctttggaaattccattcctaagctatactgcatatactgttattt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gaattcacaatgtttgtttggaaattccattcctaagctatactgcatatactgttattt 211
Query: 65 tctccttagatttaggtattgagcacttattttagcgtgtttttcttctgtgttactaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tctccttagatttaggtattgagcacttattttagcgtgtttttcttctgtgttactaaa 271
Query: 125 tgatgac----------aaaaaaac-aaaaaac--aac--aac-----------aac--a 156
||||||| |||||||| ||||||| ||| ||| ||| |
Sbjct: 272 tgatgacaaaaaaaaaaaaaaaaacaaaaaaacaaaacaaaacaaaaaaaaaaaaacaaa 331
Query: 157 aaaaaaagtaggtcctggactctagaattgtgttgtagggtggttacttctaggttactg 216
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaaaaaagtagggcctggactctagaattgtgttgtagggtggttacttctaggttactg 391
Query: 217 g-------------------------ccctcagcattagggccagagaagtctagtgttg 251
| ||||||||||||||||||||||||||||||||||
Sbjct: 392 gccctctggaggctgtctaaagaccaccctcagcattagggccagagaagtctagtgttg 451
Query: 252 tctatgaaaagaaacagcttctccctgttatctcctgttgtgtacaatcgttgtggatgc 311
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 452 tctatgaaaagaaacagcttctcgctgttatctcctgttgtgtacaatcgttgtggatgc 511
Query: 312 tggagattttcttaactgaggttggtacagagggttatttccattgtaagactccgggga 371
||||||||||||||||||||||||||| |||||||
Sbjct: 512 tggagattttcttaactgaggttggta--------------------------ccgggga 545
Query: 372 gccctagcttaccgggacccccgagtgaaccacgtggagccagaatcagtgcaaaaagca 431
||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 546 gccctagcttaccggaacccccgagtgaaccatgtggagccggaatcagtgcaaaaagca 605
Query: 432 agaggaaattattgttccagtgcactggggtcgtaccagaccggaaggagaggcagcgac 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 606 agaggaaattattgttccagtgcactggggtcgtaccagaccggaaggagaggcagctac 665
Query: 492 ccccagcaccagtttggtgagtttttatatggtttccaggagcagaacagagcatcagca 551
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccccagcaccagtttggtgggtttttatatggtttccaggagcagaacagagcatcagca 725
Query: 552 acagtgcacccttttaatctgattggtctttagggaatgaggtgacaaggacttcccttg 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acagtgcacccttttaatctgattggtctttagggaatgaggtgacaaggacttcccttg 785
Query: 612 tctgaaggtgagcaagtcagtcctgaggaatgtgtccccacccacaggtctgttcctgcc 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tctgaaggtgagcaagtcagtcctgaggaatgtgtccccacccacaggtctgttcctgcc 845
Query: 672 ctgtggt 678
||||||
Sbjct: 846 ttgtggt 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_a10.g1 MSMg01no312_a10.g1 CHROMAT_FILE:
MSMg01no312_a10.g1 PHD_FILE: MSMg01no312_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:01 2005
(281 letters)
>mm_chr3_15160423_15161103
Length = 681
Score = 520 bits (269), Expect = e-152
Identities = 278/281 (98%)
Strand = Plus / Minus
Query: 1 aaatgcaacctaagaaatatttttttgtttgtgtcttgttccttgtctgcttgctttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaatgcaacctaagaaatatttttttgtttgtgtcttgttccttgtctgcttgctttgtt 302
Query: 61 tattacagaatctatttccagcaaatcatgtagtggtacctaacaattcctgcatggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattacagaatctatttccagcaaatcatgtagtggtacctaacaattcctgcatggtgt 242
Query: 121 ttaaaccattgtgtagtggccccatgctatgtcatggtgctgtgtgcattttgggagtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaaaccattgtgtagtggccccatgctatgtcatggtgctgtgtgcattttgggagtgc 182
Query: 181 cagctgtgtttctgcatccttagcttcctcgctttcacagtgtccagactctactgcata 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 cagctgtgtttctgcatccttagcttcctcgctttcagagtgtccagactctactgcata 122
Query: 241 ccatattggaaggctgaagcagagtatgaaatgggaggggt 281
||| | |||||||||||||||||||||||||||||||||||
Sbjct: 121 ccagactggaaggctgaagcagagtatgaaatgggaggggt 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
