BAC Information

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BAC

Clone NameMSMg01-312D16
Chromosome3 (Build37)
Map Location 67,836,602 - 67,836,907
singlet/doubletsinglet
Overlap geneEG208426
Upstream geneRsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D16.T7 (MSMg01no312_d16.b1)MSMg01-312D16.TJ (MSMg01no312_d16.g1)
ACCAG434505AG434506
length729727
length of high quality
(start - end)
312 (44 - 355)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no312_d16.b1 PHD_FILE: MSMg01no312_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:15 2005CHROMAT_FILE: MSMg01no312_d16.g1 PHD_FILE: MSMg01no312_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCTCTGCTCCCGGCCATGTTAAAAAAAAATGTGGAGACCAATTTT
TGAATATGAACATTGTCAATAATTCCTACCAGTCATTTTTCCTCCTTGGC
TGGTGTTGAATCCTACAGGAGATTGGGACTGTTTCTACTGTCTTCCACTG
CAGTCTCACACAAAGGACAGTGCCTGACCCTTGACTGCATCTGCTACGTA
ATGACTAGAACAGTGATCAAATGGCTGAAAGAGAGTTCACTGATTTCTAA
CATCCTTTACTGTCTTTCTTAATTTTAATAATTGTTTTCTAGGGAAAGAT
TTAATTGANGTTGNCTTCCCANAGCAGGTCCCATTGGGACAGTAGCTGTC
TCTATGTGTCTTTTGCGCCAAATCCATCGAAAAAATGGTGGGTTGCGAGA
TATGGTACTTTCTGAAACTGGCCTCCAGGTGACTGAAAGACAAGGAAAAT
TATGGAGATAAAGGGGAGCCACTTGATGGTGATCTGCGTGTTCAACTACA
TACTATAGTGTGCGCTGCTCTCTTGTTTCTCTTTGTAAGGATTTGCTTTA
TCCTTGTTTTGTAAATTTTTTTACAGATCTAGTCCCATTATATAGCCCTA
GCTCATATATAGCCTGAAACTCAAAGATGAGGATGGTCTCCCACTCCCAG
AGATCCCCTGCTTACCTCTAGAGTTGCAG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATG
GGGTTATTTGATTTTCTGAAAAATTCCTGAACAGAACAGCAATGGCTTGT
GCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTT
CTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATT
GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAC
ATATATAAAGAACTCAAGAAGGTGGAGCATGCTCTTATTGACATGCTGTA
TAGAGGTCTAATCATAATCCCCCCCCCCCCCCTTTGTGGAACAGGATCTC
TCCCATTCTTTCTGCCGCCGCCAAAAAAAAATATAAATGTTCCCCATGGG
TTCAGGGTTAGAATGCTTGTTTTCCAGTGATGGTGCTAATTTGTGAAGTT
GGGGGAACAAGAAATAGATAGGGCAGAGTTGGAGGGACAGGGTTATTAGA
TATAGATCCTTGTGGATATAGTACCCCTGGCCACTTCCTGCTTTGTTTAC
AGCTTCCTGGACTGGGTGAAGTAAATAGTCATCTTTTGCCAATCTCCTAC
TGCTGTCACATCCAGTCCAAATACATGGACTCAGACATTCAAACCATGAA
CCAAAAGTTCCCCTCTCTCTCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d16.b1 MSMg01no312_d16.b1 CHROMAT_FILE:
MSMg01no312_d16.b1 PHD_FILE: MSMg01no312_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:15 2005
         (312 letters)



>mm_chr3_67836398_67837108
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%), Gaps = 1/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctctgctcccggccatgttaaaaaaaaatgtggagaccaatttttgaatat 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcactctctgctcccggccatgttaaaaaaaa-tgtggagaccaatttttgaatat 263

                                                                       
Query: 65  gaacattgtcaataattcctaccagtcatttttcctccttggctggtgttgaatcctaca 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 gaacattgtcaataattcctaccagtcatttttcctccttggctggtgctgaatcctaca 323

                                                                       
Query: 125 ggagattgggactgtttctactgtcttccactgcagtctcacacaaaggacagtgcctga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 ggagattgggactgtttctactgtcttccactgcagtctcacacaaagggcagtgcctga 383

                                                                       
Query: 185 cccttgactgcatctgctacgtaatgactagaacagtgatcaaatggctgaaagagagtt 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccttgactgcatctgctacgaaatgactagaacagtgatcaaatggctgaaagagagtt 443

                                                                       
Query: 245 cactgatttctaacatcctttactgtctttcttaattttaataattgttttctagggaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactgatttctaacatcctttactgtctttcttaattttaataattgttttctagggaaa 503

                  
Query: 305 gatttaa 311
           |||||||
Sbjct: 504 gatttaa 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)