BAC Information

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BAC

Clone NameMSMg01-312D24
Chromosome3 (Build37)
Map Location 32,327,266 - 32,327,558
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik
Downstream genePik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D24.T7 (MSMg01no312_d24.b1)MSMg01-312D24.TJ (MSMg01no312_d24.g1)
ACCAG434521AG434522
length742741
length of high quality
(start - end)
322 (39 - 360)295 (68 - 362)
definitionCHROMAT_FILE: MSMg01no312_d24.b1 PHD_FILE: MSMg01no312_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:17 2005CHROMAT_FILE: MSMg01no312_d24.g1 PHD_FILE: MSMg01no312_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
AACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTA
AGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTA
AAGTGGGAAATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGA
AATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTA
TGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTC
ACATGTTATCAAGCAGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCA
GGGCAATCTATCTTTTTTAAAGCGCCCCCAGAGAGTAGGAGCAAAGAGGA
AATATGGTGCACAAAACAACTATACAGAACATTCCACGGGTCTTGAACCC
GAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAA
GGAAAAGAAAAAAGAAAAGAAAAAAGATCAATTAGCGGAGGTCTCTAGGA
GAAGGAGCCTATACTCATCACTAGATGAGCTCAAGGAGCCAGTTCTTAAT
AGTTCTGAATCAAATGAAAAGGCTATTAGGGCCTGGAAGGCGCTCTCCCG
AGCAGGTGAAGCCACTGGACAACTAACAAAGATCGTCCAGAGACCTCATG
AGTCATTCTCAGATTTTGTGCGCAGAATGACAGAGGCAGCAA
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTATGTAGAAAAAAATGACCTTGAACTGCTGA
CCCTCCTGCCAAGAGGGCACTAACCAGGTCATCCAGCTAAAACATAGACC
TTTAGGACCATGACCTGAGCAGGCAGGTTAAAAGATTCTAATGTGATAGC
AAAATCAGTTTCACTTCAGAGCCACTAACGAATACGAATTAGTAATACTG
GTTTTAAGTTGCTAGGTAAATCATGAACTTAAAAACACAACTACCATACG
AACCATATCTTGAAATGAGGGGTAGAAAAATTTAATTTTATAGGCCAAAA
GTGTGGCTTATTGTTTTTAGTACCCGCCCCACCATGCTTAAGGTTCTGTT
TTGATTCCCTACAAAACTGACAATGCAAGGACAATAACAAAAGCAAAATC
AAATTTCAGTGTGCACTAAGGTGAGCTAACATTTCAACTCCAAAGGAGAC
TAAGCATTTAGGCAGCTGGAGACAGAGCTGTGAGATGGTAGCACCTGCCT
AGCAGGTGCCTAGGCTGGATGCCAATACCCAAAGTAAAAGCAGGGAAGGA
AGAACAGGCCAGGGAGGCTTATGATATGCAATTATGAGGAGAGTGCAGAA
AAGACAGGGGGACTTGATACTAGCACGTGATTTTAATACACAATGTTCTC
CTTAGGATGTGACCTAGAGTTTCCTAGAGACTACTCCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d24.g1 MSMg01no312_d24.g1 CHROMAT_FILE:
MSMg01no312_d24.g1 PHD_FILE: MSMg01no312_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:17 2005
         (295 letters)



>mm_chr3_32327023_32327717
          Length = 695

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtagaaaaaaatgaccttgaactgctgaccctcctgccaagagggcactaaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 actatgtagaaaaaaatgaccttgaactgctgaccctcctgccaagagggcactaaccag 477

                                                                       
Query: 61  gtcatccagctaaaacatagacctttaggaccatgacctgagcaggcaggttaaaagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gtcatccagctaaaacatagacctttaggaccatgacctgagcaggcaggttaaaagatt 417

                                                                       
Query: 121 ctaatgtgatagcaaaatcagtttcacttcagagccactaacgaatacgaattagtaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ctaatgtgatagcaaaatcagtttcacttcagagccactaacgaatacgaattagtaata 357

                                                                       
Query: 181 ctggttttaagttgctaggtaaatcatgaacttaaaaacacaactaccatacgaaccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 356 ctggttttaagttgctaggtaaatcatgaacttaaaaacacaactactatacgaaccata 297

                                                                
Query: 241 tcttgaaatgaggggtagaaaaatttaattttataggccaaaagtgtggctta 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcttgaaatgaggggtagaaaaatttaattttataggccaaaagtgtggctta 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)