BAC Information

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BAC

Clone NameMSMg01-312L20
Chromosome3 (Build37)
Map Location 7,575,749 - 7,576,063
singlet/doubletsinglet
Overlap geneIl7
Upstream gene1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik
Downstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312L20.T7 (MSMg01no312_l20.b1)MSMg01-312L20.TJ (MSMg01no312_l20.g1)
ACCAG434872AG434873
length742739
length of high quality
(start - end)
322 (43 - 364)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no312_l20.b1 PHD_FILE: MSMg01no312_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:53 2005CHROMAT_FILE: MSMg01no312_l20.g1 PHD_FILE: MSMg01no312_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATGTCCACTTACTAACAGTATCACAAGGCACACAAACACTGGTGAAC
TGCACAAGTAAGGTGAGAGTGGACTACTCACTGTGAACCACATTACATTC
CTCCTGTTCAGGACACTGCCATCCTCTGTTCCCTGCTATTGTCAAAGAAC
TCTAAGTGCTGCTTATCGCTTTAGTTGAGAAGTATTTCCCTTACTCTAGA
AGGAAGTCTCAGCCTTTGGAAAGCGAGTCATGCCTTGGCTGCAGAGTCAG
AAAGCCCATCTGAATCTTCTTTAACAGATTAACCAATCTGAGGCATTGAA
CAATGATCATGTTGTTTTTGTGTCACCCCACCCCTTTTTACATTTCCATT
ATGGTTAAGTTGTTTATCCACCCAGATATGAAAACATAATGATTTTTTGT
TAGGAAGCAGGTGAGTTTTCACAAACTTCATTGGGAAGCCATAGGCATTC
CAACTTGAAGTATAAAATTCAAAGTACACAAATATGTGACCCAGAAGCAA
AGTAAAAATGATAAGGGCCTTGTCCCAGAATTTTGAAAGTTTAGAATATT
TGTGCCTCCAGAATTTCAGAGAAAAAAAAAAAAGCAAGATTTACTGCCAC
CGACTTTTTCTGTATTATTATACATAACTCTCCCTGGTGAATGGTCAGGA
CATCTCACAAACAGTTTTATCCATGCTCAAAGTCCTTACAGA
AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTATGTTTGATGCCAAATTATTTACAA
TATGAAGTAAAATTTTTGTTAGAATAGGATGGCCCATTATCTGTCTTAAT
AAGTTTAGGCAATCCCATGGCATTAAAGGCTTGTAGGCAATGATCAATTA
CATTTTTGGAGGCTTCTTTAGTATGTAGAGAAGCAAAAAGAAATCCTGAA
AAAGTATCAATACAAATATGTATATATTTTAATTTTCCAAATTCTGTATA
ATGAGTTACATCCATTTGCCAAATATGATTAGGCATAAGACCTCATGGAT
TAACTCCTAAATGGGTCTTTGCCCCCCCCCCCCCCCACATTTAGGACATT
GTTTTACAATCATTCTTGCCCGCTCCTTAGAAAACAAAAATCAGAGTCGT
GGGGGATGGCTAGAGAGATGAAATTTTTCATGATCACGTTTGGCCAAAGC
AACAGGATCTGAAATTAAGGCTTCTCCTATTAGAGCTCTGTGGATGCAAT
CATTGCCTTCAGCTATAGGTCCAGGAAGAGCAGAATGAGATTGTATGTGA
CCAATATAGAACTGGTGTTTTCGGGCAAGAATGGTGTTTTGCAATTGTGA
AAACAGGGATCCTGCTGGTGTATTAAAGTAAAACGTACCACAGGTCTCCA
ATAAGGGTACCAATTGTGTTACATATAAACTATCAGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_l20.b1 MSMg01no312_l20.b1 CHROMAT_FILE:
MSMg01no312_l20.b1 PHD_FILE: MSMg01no312_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:53 2005
         (322 letters)



>mm_chr3_7575545_7576266
          Length = 722

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgtccacttactaacagtatcacaaggcacacaaacactggtgaactgcaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcaatgtccacttactaacagtatcacaaggcacacaaacactggtgaactgcaca 460

                                                                       
Query: 65  agtaaggtgagagtggactactcactgtgaaccacattacattcctcctgttcaggacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agtaaggtgagagtggactactcactgtgaaccacattacattcctcctgttcaggacac 400

                                                                       
Query: 125 tgccatcctctgttccctgctattgtcaaagaactctaagtgctgcttatcgctttagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgccatcctctgttccctgctattgtcaaagaactctaagtgctgcttatcgctttagtt 340

                                                                       
Query: 185 gagaagtatttcccttactctagaaggaagtctcagcctttggaaagcgagtcatgcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gagaagtatttcccttactctagaaggaagtctcagcctttggaaagcgagtcatgcctt 280

                                                                       
Query: 245 ggctgcagagtcagaaagcccatctgaatcttctttaacagattaaccaatctgaggcat 304
           ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 279 ggctgcagagtcagaaagcccatctgaatctgctttaaaagattaaccaatctgaggcat 220

                          
Query: 305 tgaacaatgatcatg 319
           |||||||||||||||
Sbjct: 219 tgaacaatgatcatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)