Query= MSMg01no312_m15.b1 MSMg01no312_m15.b1 CHROMAT_FILE:
MSMg01no312_m15.b1 PHD_FILE: MSMg01no312_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:57 2005
(678 letters)
>mm_chr3_72144726_72145803
Length = 1078
Score = 1274 bits (659), Expect = 0.0
Identities = 671/675 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttgggatttcaagtagaataaatcaggcctgattatgttcttcagtgatggag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ggaattcttgggatttcaagtagaataaatcaggcctgattatgttcttcagtgatggag 819
Query: 64 atgtgaactcagccccttatgcctggacacatgagagcatacacattctgtttctcattg 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 atgtgaactcaggcccttatgcctggacacatgagagcatacacattctgtttctcattg 759
Query: 124 ggccattttttccatattcactttgtttatatttaagttctacaatgggatcactaaaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ggccattttttccatattcactttgtttatatttaagttctacaatgggatcactaaaca 699
Query: 184 ttgacaacaagtaagtgccactgtatttagttttctgttctcagtattaaaggaataaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttgacaacaagtaagtgccactgtatttagttttctgttctcagtattaaaggaataaat 639
Query: 244 tctaattttatgtcaaaatacaaaactacacaggtactcaggacatttacttacataact 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 638 tctaattttatgtcaaaatacaaaactacataggtactcaggacatttacttacataact 579
Query: 304 tgagtaccgaatattataatataccgcccaaaatgtctagaccttgccaatctataattt 363
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 578 tgagtaccgaacattataatatactgcccaaaatgtctagaccttgccaatctataattt 519
Query: 364 ctaattctctttgctttacttttcagaggaaagtagcttgttacaattagttacatacat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctaattctctttgctttacttttcagaggaaagtagcttgttacaattagttacatacat 459
Query: 424 ttttaagtttacagtaatattatcttttatatttcaattctctattctgttcaggttaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttttaagtttacagtaatattatcttttatatttcaattctctattctgttcaggttaaa 399
Query: 484 aagtgtggaaatattttacattaaaggcatagtcaatcatataattgcatacttcatctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagtgtggaaatattttacattaaaggcatagtcaatcatataattgcatacttcatctt 339
Query: 544 cactcgatgtttccatatatcaaattactaagggacaagaacaaattttctggaagtcta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cactcgatgtttccatatatcaaattactaagggacaagaacaaattttctggaagtcta 279
Query: 604 aatatattactaccattaataactcgtttagattatgttctctgagttgaaattgtgttg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aatatattactaccattaataactcgtttagattatgttctctgagttgaaattgtgttg 219
Query: 664 gtaaacacagcctta 678
|||||||||||||||
Sbjct: 218 gtaaacacagcctta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_m15.g1 MSMg01no312_m15.g1 CHROMAT_FILE:
MSMg01no312_m15.g1 PHD_FILE: MSMg01no312_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:57 2005
(673 letters)
>mm_chr3_72021189_72022255
Length = 1067
Score = 1108 bits (573), Expect = 0.0
Identities = 644/672 (95%), Gaps = 9/672 (1%)
Strand = Plus / Minus
Query: 5 tcagaaaaaaataaaagaaagaaaaattcttattaatttaacattttcttaattgttatt 64
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 893 tcagaaaaaaataaaagaaagaaaaattcttattaatttagtattttcttagttgttatt 834
Query: 65 attaactaagaatacttcatgatttgtagacatttaaaaactattatgtgggctggagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 attaactaagaatacttcatgatttgtagacatttaaaaactattatgtgggctggagaa 774
Query: 125 atggctcagcatttaagagtaccgactgctcttccagaggtcttgagttcaattcctatc 184
|||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct: 773 atggctcagcgtttaagagcacctactgctcttccagaggtcttgagttcaattcctagc 714
Query: 185 aaccacatggtcactcacagccatctgtaatgggatccagtgccctcttctagtgtgtct 244
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 713 aaccacatggtcacacacagccatctgtaatgggatccagtgccctcttctggtgtgtct 654
Query: 245 gaagacagctacagtgtactcacatac--aaaataaataaatctt-aaaaaaaactatta 301
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 653 gaagacagctacagtgtactcacatacataaaataaataaatcttaaaaaaaaactatta 594
Query: 302 tgaatttacttttaaattaattacaatgagatatgtctttttttaattgagttctccaca 361
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 593 tgaatttacttttaaattaattacaatgaga------tttttttaattgaattctccaca 540
Query: 362 gtagagaagctctgtgtataattaggaaacttacccaatgtttctctctgactctgtctc 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 539 gtagagaagctctgtgtataattaggaaacttatccaatgtttctctctgactctgtctc 480
Query: 422 tgtctctctgtctctgtcccttccatccttccttccttcctttcattcttttatttttgt 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 479 tgtctctctgtctctgtcccttccatccttccttccttcctttaattcttttatttttgt 420
Query: 482 atctgtatagcctatttagagaaactcttgcattattttatataccactgatagtcaaat 541
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atccatatagcctatttagagaaactcttgcattattttatataccactgatagtcaaat 360
Query: 542 gattttaattttctggccacctactgcagtgtcattcagataaagtacctaatccgcatt 601
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 359 gattttaattttctggccacctactgcagtgtcgttcagattaagtacctaatccgcatt 300
Query: 602 ctagagtctgatttcagtaaaatcatttcaagatgacaaattccttanataaagcaaatc 661
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 299 ctagagtctgatttcagtaaaatcatttcaacatgacaaattccttaaataaagcaaatc 240
Query: 662 tttttattttct 673
||| ||||||||
Sbjct: 239 tttctattttct 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1067
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1057
Effective search space: 700791
Effective search space used: 700791
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
