BAC Information

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BAC

Clone NameMSMg01-312O03
Chromosome3 (Build37)
Map Location 102,365,127 - 102,365,683
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb
Downstream geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312O03.T7 (MSMg01no312_o03.b1)MSMg01-312O03.TJ (MSMg01no312_o03.g1)
ACCAG434975AG434976
length743742
length of high quality
(start - end)
318 (46 - 363)669 (74 - 742)
definitionCHROMAT_FILE: MSMg01no312_o03.b1 PHD_FILE: MSMg01no312_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:04 2005CHROMAT_FILE: MSMg01no312_o03.g1 PHD_FILE: MSMg01no312_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTTCAACTGCCCCCACGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTCCAATAGCCAGAAGCTAGAAAGAACCGAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCT
AGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGA
AAAATGAAGACTGAAGTGTGGACACTATACCCCTCCTTAGAAG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGACATCACTTTGGTATTCATCCAAC
AGGCGCTTTCATCATGACTAGACCCAGCTCATGCCATTCTGGCTTCTGTT
TCAACTCACTTGAGGTACAGAGCCAGTAGGTGGCTCCAGGTAGAGTGGTT
CCTAAAAGGGGCACAAGTTACTCTTGCATCAAGGGTGTTGCAGAGGGAAA
GCAAGTGGGATGGATGGACCCTGATGGCTTTTAGTAAGGAGTAATGAGCA
CACTTGTAAGCTTAGAAGCATCAGAGGAGTCTCAGAGTTAAAAACGTCAT
GGCTAGGATGCTTATTCCATGTTTCAAGGTCCTAAAATTTCCCAGTAGGG
TTCCAATCTCATCATTGCCGACCCAAATTCTTGTGCATTTAACTGTCTTT
GACAATCAGCCACAATGACTATTTGTAATTGGAAAAACCAAAAGCTTCTT
TGTAGGCAACCCCAAGAGGCTCTTTGGCCTTTGGAGCAGGCTTTCAATTG
CTTGTTGCCCTCAGCTGTTTCTTATCTTTCTGGAAGCATCATAGTGTTAA
CATCTAATCCTGTTCTCTTAGAGCTCTGATTGTTTCCAAACATCTCGAAT
GTGAGTAGATTGCGCTGCCCGAGCAATACCTTCCCCATAGATCCTGAGTG
ACTGAGATATGATTCCCACAGTAGTCCTAGTCTACGGTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_o03.g1 MSMg01no312_o03.g1 CHROMAT_FILE:
MSMg01no312_o03.g1 PHD_FILE: MSMg01no312_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:04 2005
         (669 letters)



>mm_chr3_102364615_102365683
          Length = 1069

 Score =  946 bits (489), Expect = 0.0
 Identities = 544/569 (95%), Gaps = 12/569 (2%)
 Strand = Plus / Minus

                                                                        
Query: 101  cagtaggtggctccaggtagagtggttcctaaaaggggcacaagttactcttgcatcaag 160
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1069 cagtaggtggctccaggtggagtggttcctaaaaggggcacaagttactcttgcagcaag 1010

                                                                        
Query: 161  ggtgttgcagagggaaagcaagtgggatggatggaccctgatggcttttagtaaggagta 220
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 1009 ggtgttgcagagggaaagcaaatgggatggatggaccctgatggcttttagtaaggagtg 950

                                                                        
Query: 221  atgagcacacttgtaagcttagaagcatcagaggagtctcagagttaaaaacgtcatggc 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 949  atgagcacacttgtaagcttagaagcatcagaggagtctcagagttaaaaatgtcatggc 890

                                                                        
Query: 281  taggatgcttattccatgtttcaaggtcctaaaatttcccagtagggttccaatctcatc 340
            ||||||||||||||||          ||||  ||||||||||||||||||||||||||||
Sbjct: 889  taggatgcttattcca----------tcct--aatttcccagtagggttccaatctcatc 842

                                                                        
Query: 341  attgccgacccaaattcttgtgcatttaactgtctttgacaatcagccacaatgactatt 400
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  attgctgacccaaattcttgtgcatttaactgtctttgacaatcagccacaatgactatt 782

                                                                        
Query: 401  tgtaattggaaaaaccaaaagcttctttgtaggcaaccccaagaggctctttggcctttg 460
            ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 781  tgtgattgaaaaaaccaaaagcttctttgtaggcaaccccaagaggctcttaggccttcg 722

                                                                        
Query: 461  gagcaggctttcaattgcttgttgccctcagctgtttcttatctttctggaagcatcata 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 721  gagcaggctttcaattgcttgttgccctcagctgtttcttatctttctggaagcatctta 662

                                                                        
Query: 521  gtgttaacatctaatcctgttctcttagagctctgattgtttccaaacatctcgaatgtg 580
            |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 661  gtgttaacatctaatcctgttctcttagagctccaattgtttccaaacatctcgaatgtg 602

                                                                        
Query: 581  agtagattgcgctgcccgagcaataccttccccatagatcctgagtgactgagatatgat 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  agtagattgcgctgcccgagcaataccttccccatagatcctgagtgactgagatatgat 542

                                         
Query: 641  tcccacagtagtcctagtctacggtttgt 669
            |||||||||||||||||||||||||||||
Sbjct: 541  tcccacagtagtcctagtctacggtttgt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)