NATTTTNNNNNGGGCAGTGGGCGCTAAGACTACTAAGGGAGAGGATCCGC
GGAATTCCATATAGATCCACTTCCAATTTATGTTTCTTTGACTTTGGCCT
TCTCTTTGATTATTGTATATCATCTCCCACCCAGTTTCTTCCTCAAAGAA
CATCTTTGCTCAGGCCTACTTCAGATAGACTTCATGTGTGCTCAGAGAGC
TTTCTTCCTTTGCATCTATACTATAGGTGTATAGGACCTACACACACACT
CACTTTCTTGGCTTCTAATTTCACATTTTTTTCTCTTCAAGATAGTTGGA
AAAAGCACATGGCAAAGCATAAGGAAGAAGGGTTTATTTTGGCACAGAAT
TTCAGGCCATAGTCCAGTATGGCAGGAGAATCGTGATGATTGGGAACATG
ATTAAAGAGGTCAGACAGGATACAGTCACCGAGGACGAGAGAGGTGAATG
CTGTTGTTTGAAACTGGCTTCCCCCTTCTCCTACTACATTCAAAAAAGGG
GCCTAGCCCTTGGGTAGAGGCTCCGGCATTTGCCTTCCGTCCTCAGTTAA
ATCTCTCTGGAAACAGACTGACAGACATGCTCAAAGGTGTATCATCTAGG
CTGAGTGTAAATCCCAAGATGGTAAAAACCCAGGTTCAGCATCATGTCCT
CCATCACTAGGTTTTCATCTCCAAGAAGGTAGGAAGCCAATCTATTTTGG
TTGCAAATAGATGATAGTTTTCAATAGCGTTTCATTTTTAATAGGTGGTT
AAATAAACATTTGTTGAATGAATGAATGAATGAATGAGAGCATTGCACAA
TGACAGTTTGTTCATTATTATTAATTTTTTGCATGGAGTAAAATATTATT
TGCAATCAATAAAGATAGTCCATAATTTGAAATCTCANAAAATTGAAACT
GGAGGATCACTTTATTTGAGGAATTTTGGTATGCTCAGTGGAACCCTGTC
CCGGAAAAATTTCCTTATACCTTTTTTTATCAATGTAAACTTCCATTCTC
TTCCGTTTTGATTTATTTATTTTCCCAACCTCTTAGAAATATTCCCTTGC
CCTCCTTCCTATCTTGCTTGGCTTTTTTCCTTATTTGTTCTGTATCATTT
CCTTATTTACACTTATAATTTTATTTCTACTAATTTTTCTCTCCTCTTTT
TTCTCTTTAAACCACTTTTCTTTACTCTTTCTACATTTCTT

NNTTTAAGCTAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCTAACATAAAATAATAACTATTCCTATT
TTGGTAGTGTGGGAGAAACCCCCAGAAAATATGTAAATAAGACCGGAAAA
CCTGGATCATTAGGAAAGTCAAAGCTATTAAAAAGCTATCAGAAAAACGA
GAACATTAAGGCACAGACAAAGATATAGTATTTTATTTAAAGCCAAATTT
TATATCAAACATGTGAGGAAATGAGGAAAGTATGAAGTTACTTAAGTGCA
CAAAATAGATAACATTATTTGATGATGTTATCAATCTCAGAATTTTTGTT
GTCTTGTATTAGAATATTTACATAATAATGTTGGCCAGAAAATGTTTTAT
AATTTCTCAAGAATTTATTTCAGATTTTAGCTAGNTATGGTGATTATTTT
TTTTTCCCCCCCCCCANGNNGANCCCCCCCCCAAAAAAAAAGGGGGGNNC
NNNCNNCNNNGCCNCNNNNCNCCNNNNNCCCCCNCCCNNCNCCCCCCCNN
CCCCNCCNNNNCCCCNCNCCCCCCCCCCCCCNCNNCNCCCCCCCCCCCCC
CCCCNCCCCCCCCCCCCCCCCCCCNNCCCCCCCCCCCCCCCCCCNCCCCC
CCCCCCCCCCCCCCNCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCC
CCCNCCCCCCCCCCCCCCCNNCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCNCCCCCCCCCNCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCNCCCCCCCCCCCCCCCCNNCCCCCCCCCCCCCCCCCCCCCNC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNCCCNC
CCCCCCCCCCCNCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCNCCC
CCCCCCCCCCCCCCCNCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCCCNCCCC

Query= MSMg01no313_b22.b1 MSMg01no313_b22.b1 CHROMAT_FILE:
MSMg01no313_b22.b1 PHD_FILE: MSMg01no313_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:27 2005
         (296 letters)



>mm_chr3_119053856_119054551
          Length = 696

 Score =  530 bits (274), Expect = e-155
 Identities = 289/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttcccccttctcctactacattcaaaaaaggggcctagcccttgggtagaggctccggca 62
           ||||||||||||||||||||||||   ||||| ||||||| |||||||||||||||||||
Sbjct: 672 ttcccccttctcctactacattcagtcaagggtcctagcctttgggtagaggctccggca 613

                                                                       
Query: 63  tttgccttccgtcctcagttaaatctctctggaaacagactgacagacatgctcaaaggt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttgccttccgtcctcagttaaatctctctggaaacagactgacagacatgctcaaaggt 553

                                                                       
Query: 123 gtatcatctaggctgagtgtaaatcccaagatggtaaaaacccaggttcagcatcatgtc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtatcatctaggctgagtgtaaatcccaagatggtaaaaacccaggttcagcatcatgtc 493

                                                                       
Query: 183 ctccatcactaggttttcatctccaagaaggtaggaagccaatctattttggttgcaaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctccatcactaggttttcatctccaagaaggtaggaagccaatctattttggttgcaaat 433

                                                                 
Query: 243 agatgatagttttcaatagcgtttcatttttaataggtggttaaataaacattt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agatgatagttttcaatagcgtttcatttttaataggtggttaaataaacattt 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no313_b22.g1 MSMg01no313_b22.g1 CHROMAT_FILE:
MSMg01no313_b22.g1 PHD_FILE: MSMg01no313_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:27 2005
         (312 letters)



>mm_chr3_118894395_118895106
          Length = 712

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatatgtaaataagaccggaaaacctggatcattaggaaagtcaaagctattaaaaagc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatatgtaaataagaccagaaaacctggatcattaggaaagtcaaagctattaaaaagc 260

                                                                       
Query: 61  tatcagaaaaacgagaacattaaggcacagacaaagatatagtattttatttaaagccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcagaaaaacgagaacattaaggcacagacaaagatatagtattttatttaaagccaa 320

                                                                       
Query: 121 attttatatcaaacatgtgaggaaatgaggaaagtatgaagttacttaagtgcacaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttatatcaaacatgtgaggaaatgaggaaagtatgaagttacttaagtgcacaaaat 380

                                                                       
Query: 181 agataacattatttgatgatgttatcaatctcagaatttttgttgtcttgtattagaata 240
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 381 agataacattatttgatgatgttatcaatcgcggaatttttgttgtcttgtattagaata 440

                                                                       
Query: 241 tttacataataatgttggccagaaaatgttttataatttctcaagaatttatttcagatt 300
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct: 441 tttacataataatgttggccagaaaatgtcttaaaatttctcaagaatttaattcagatt 500

                   
Query: 301 ttagctag 308
           ||||||||
Sbjct: 501 ttagctag 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)