BAC Information

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BAC

Clone NameMSMg01-313G18
Chromosome3 (Build37)
Map Location 106,950,697 - 106,950,975
singlet/doubletsinglet
Overlap genenone
Upstream geneChi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2
Downstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313G18.T7 (MSMg01no313_g18.b1)MSMg01-313G18.TJ (MSMg01no313_g18.g1)
ACCAG435355AG435356
length1,3061,331
length of high quality
(start - end)
366 (139 - 504)279 (508 - 786)
definitionCHROMAT_FILE: MSMg01no313_g18.b1 PHD_FILE: MSMg01no313_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:05 2005CHROMAT_FILE: MSMg01no313_g18.g1 PHD_FILE: MSMg01no313_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCCTATTNNNNNNNCCACTCTGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGCAATTCTTAGATAGGTCAACCCGCTTAAAAAGACAATTTAGAGTG
AGCCATTTTAAGAGATGACCTTCTCCAGTGTCTCACGTTTACAAAGCGGT
GACAAATATCATTAAAAGCAAAGCAAAGCAAAGCAAACCACACTCAAACT
GAACAGCTTGACTCCTGGGATGATTTAGTTGGCTTTTCTTTTTCTTTTTT
TTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCT
TCAGACACTCCAGAAGAGGGCGTCAGATCTTGTTACAGATGGTTGTGAGC
CTCCATGTGGTTGCTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCG
GGTACTCTTACCCACTGAGCCATCTCACCAGCCCTTAGTTGGCTTTTCAT
CCCCAGCGTTAGGGAAGGGAATAGATGTCAACTAGGGAGCTAGGATTGGC
AAGGCAGAGTAAGTGCTTTTAGTTTATCAGCGGGGGAACATTGGTGTTTG
GTCTACATAGATTAACCTTTTATATAGTTCAAGAGTGTTTTTACCTCCCA
AACCTTAATGATCTTCCTTCTCAATTACGAAATAGTATTTTGCAATCTGT
GCTTATATTAATGTTGAATCCACCTGTGGCTTATTACCAACCATGGGTTT
ATAAGAAATCTGGAAACACAGGAACTGATTTCATCTTTGGGAACCTGTGA
TTTTTGCCTAAGCCTCATGCACTTTCCTACACAACTTTAAAACCATTTTA
ATTCCATTTGAGTTCAGGATCTAAGTTTGAGCTTAATATAAACATCTTGG
TAAAACAATGTCCTTTAAATACTTTAGATTCAAGGCAGCACTCAGATGCA
ATCCTTAATTAACATACTTATTACTTGTAACCTACCAAGACTAAAATACC
CTGTGAGCCCATGAAAAGAGTAACACACGGAATAGTCGCATTCTTGCCGA
CCCTCGGCTTCCCCTTAAACCGGATCCCGGGGATAACCCTCCTAAACTCT
GTTCCTCAAATGGTTAAAGATATATACTCCAAATATTATTCATTTCCATA
TTTTCCAAACCTTTTTATATTTTAATCTCCTCTAACTCAGGTAACATCTA
CTCCTTATTCTCTCTTCACATTCTCCCTTCATAATAAATCATTTTTATTC
ATTTCCTTCTCCCACTATCCTTCTTCCATACTCCCTCTCATCTAATCTTT
CATTATTCATCACCTACTCTATCTCATTTATCCTACATCCCAATATCATT
ATATAA
NNNTTATTTCACGGTAGACTGTGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATAAAAGCGTATTAAAGGTCATCAA
ATGTGTTAGCGCGGATCCCCCAGGACCCTGTACAGCACTCCACGAGGACT
GCCTTCTGTAGCTAACAAGCCTGATCAGATATGATCTTTACAGACTAAAT
GTAGAAAATATTTATAATGTGTATATAAAGCAAAAGGATTATTTGACAGG
TTTTAAGCAATAATTTTAAATGCATTTAAAAGACCAAATACCTAACATAC
ATTAAAAACAAGTAGGAGCTATTCTTAAAAGTCAGTAAAAATGACACTCA
TCTGGCTTGTATGCCATTTAAGACCCTCCATTTCATTTGTAACCAGAATA
CTTGTCAAAAATGGTTAAAAATTATAACCCGTTCGTATTAAGGAACACTA
TAGATTTTTTTTTCCCCCCCCCTACAAATGTAGGAAAGGTACCCAAAAAA
GAGGAGGCGGAAAGTCACACAATCCCATTTATGCCTAAAACTCTCTATCT
GTTCTTGTGCACATACACACACTCCCAATGTGTGGGCAAGATTCTGAAAG
AGTAACTCTCATATTGTTAACTGTTCACTCCACACAGGAGGATAAAGAAG
GTGGCTTGGAGACAAAGGAGCCCCACCATTTGCTTTACCTAATGCACATG
GTCCTTTTTATCTTTGTAAAACTATATTCCTGTATTCTTATATTTTGGAG
AACAACAAAGTCAGACAATAGAGAGATTACTGTAGCCATGGTTGTTCTTA
AGCCAAGCTGAGAAGAATTATCTAAATCTTTTTTTTTAATCTGAGATAAA
AATGAGTTCATTGTAAAATTATCAGGAAAGCTTCATCTCTTTTTTTACAT
TTTTTAAAAAAATTATTAGTTATTTTAATTATTTACATTTCTTTTTTTAC
TATAATAAAACCAGTTTTTATTAGATATTTTCCTTTAATTGCATTTCAAA
AGGTATTCCCCTTTCCTCCTTTCCCCCCCAGAAAACCCCCCCATCCAATC
CCCCTCCCCCCTGGTTAATAAACCACCCCATTCCTGTTTTCCTGGTCCTG
GGATTTCCCCTACAATTGGGGCACCTAACCCTTCCACAGACCCAGGACCC
CTCTCCTCTCCTGGAGTCCCACTAAAGACTTCTCTCTTTTCCTATATAGC
TGGGTAAAACATGTCCCCCTCCTCGAGACCCTTTTATTGTGTGGCTTATA
CCCCTAAAACACTCTCAGCTGGTGTGTGTTCTTATCGTCTTCCCACTTCG
GCGGTTAATCCACTCTCTCTACTGTACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_g18.g1 MSMg01no313_g18.g1 CHROMAT_FILE:
MSMg01no313_g18.g1 PHD_FILE: MSMg01no313_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:06 2005
         (279 letters)



>mm_chr3_106950497_106951175
          Length = 679

 Score =  501 bits (259), Expect = e-146
 Identities = 274/279 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggaaagtcacacaatcccatttatgcctaaaactctctatctgttcttgtgcacataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggaaagtcacacaatcccatttatgcctaaaactctctatctgttcttgtgcacataca 260

                                                                       
Query: 61  cacactcccaatgtgtgggcaagattctgaaagagtaactctcatattgttaactgttca 120
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cacacgcccaatgtgtgggcaagattctgaaagagtagctctcatattgttaactgttca 320

                                                                       
Query: 121 ctccacacaggaggataaagaaggtggcttggagacaaaggagccccaccatttgcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccacacaggaggataaagaaggtggcttggagacaaaggagccccaccatttgcttta 380

                                                                       
Query: 181 cctaatgcacatggtcctttttatctttgtaaaactatattcctgtattcttatattttg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 cctaatgcacatggtcctttttatctttgtaaaactatattcctgtatacttatattttg 440

                                                  
Query: 241 gagaacaacaaagtcagacaatagagagattactgtagc 279
           ||||||||||||||||||||||||| | |||||||||||
Sbjct: 441 gagaacaacaaagtcagacaatagaaatattactgtagc 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)