Query= MSMg01no313_g21.b1 MSMg01no313_g21.b1 CHROMAT_FILE:
MSMg01no313_g21.b1 PHD_FILE: MSMg01no313_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:06 2005
(733 letters)
>mm_chr3_46586173_46587305
Length = 1133
Score = 830 bits (429), Expect = 0.0
Identities = 456/465 (98%), Gaps = 1/465 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagggcaaaaatgtttctatttattaaaatgaaaaggaaataataattataaaa 64
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattcaagggcaaaaatgtttttatttattaaaatgaaaaggaaataataattataaaa 405
Query: 65 tatactgtaaaaatatgaacaactaacatcagcatccatggcataaattaaaatttaaca 124
|||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 404 tata-tgaaaaaatatgaagaagtaacatcagcatccatggcataaattaaaatttaaca 346
Query: 125 tagtggtaaataggtttacctgtgaaaacgtaagactaatatatggtggtgtgagtgtgg 184
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 345 tagtggtaaataggtttacatgtgaaaacgtaggactaatatatggtggtgtgagtgtgg 286
Query: 185 cgtgtgtacacaggtgagtgtctctgtttgtatagaccagagattaatgtcaaggatctt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgtgtgtacacaggtgagtgtctctgtttgtatagaccagagattaatgtcaaggatctt 226
Query: 245 tcccaaaaagctcaccaaaccatgaagacaaggccattcagcatggtcacaatgactcta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcccaaaaagctcaccaaaccatgaagacaaggccattcagcatggtcacaatgactcta 166
Query: 305 ctcatagtcccagctaataaactcctgaatttctccagtgttttcttcctcaccactgag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ctcatagtcccagctaataaactcctgaatttctccagtgttttcttcctcaccactgag 106
Query: 365 attatggtactacacttctgcacagggttacttacttctcttctagatatctaaacttaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 attatggtactacacttctgcacagggttacttacttctcttctagatatctaaacttaa 46
Query: 425 attctcatgcttgtggggcaagaacttactaatattcaacctcct 469
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 45 attctcatgcttgtggggcaagaacttactaatattcaacttcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1133
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1123
Effective search space: 811929
Effective search space used: 811929
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_g21.g1 MSMg01no313_g21.g1 CHROMAT_FILE:
MSMg01no313_g21.g1 PHD_FILE: MSMg01no313_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:07 2005
(379 letters)
>mm_chr3_46418749_46419527
Length = 779
Score = 654 bits (338), Expect = 0.0
Identities = 368/378 (97%)
Strand = Plus / Plus
Query: 1 tatcattcacttaattttaggtattaaggaaagacagtggataaataaggaacaatcaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tatcattcacttaattttaggtattaaggaaagacagtggataaataaggaaaaatcaaa 260
Query: 61 cttttaggagaatgctggtttttcttcattttctttccctgctatagcactggcttgcca 120
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttaggaaaatgctagtttttcttcattttctttccctgctatagcactggcttgcca 320
Query: 121 ctgatgtagtacaggcctttttctaaatagggaccacatgtttgtggaacacccatgctg 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatggagtacaggcctttttctaaatagggaccacatgtttgtggaacacccatgctg 380
Query: 181 tactcatggaccacaggtgataacaacattcattgaagtgtttttctactcagaagccac 240
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tactcctggaccacaggtgataacaacattcattgaaatgtttttctactcagaagccac 440
Query: 241 atgtaccttctctccacttgatatgaatggaaggagaacagaaaattaaaagaatgaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtaccttctctccacttgatatgaatggaaggagaacagaaaattaaaagaatgaatt 500
Query: 301 caaggatcatggagcagacagaatattattctgcctctagccggggcagtgtaacctcta 360
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 501 caaggatcatggggcagacagaatattaacctgcctctagccggggcagtgtaaccacta 560
Query: 361 agtcttactctgaagtga 378
||||||||||||||||||
Sbjct: 561 agtcttactctgaagtga 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
