Query= MSMg01no313_h21.b1 MSMg01no313_h21.b1 CHROMAT_FILE:
MSMg01no313_h21.b1 PHD_FILE: MSMg01no313_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:14 2005
(715 letters)
>mm_chr3_17754963_17756077
Length = 1115
Score = 1299 bits (672), Expect = 0.0
Identities = 705/716 (98%), Gaps = 2/716 (0%)
Strand = Plus / Minus
Query: 1 tctagaagcactaactttttaaaatgaagctcttgttcttcacgactatttatgaccaca 60
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 915 tctagaagcactaactttttaaaatgaatctcttgttcttcacaactatttatgaccaca 856
Query: 61 gaatactacctcattccatccatctgtttaatgcagccttaggaaaaatttgggttcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaatactacctcattccatccatctgtttaatgcagccttaggaaaaatttgggttcttc 796
Query: 121 cattgccaaaaacttggctgtttagtatcccctgttggtcatacagtctctttgatatgt 180
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 795 cattgccaaaaacttggctgattagtattccctgttggtcatacagtctctttgatatgt 736
Query: 181 tcctacattctgggtccaatcctcttgacctatctgcctgcatccacttgtccccaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcctacattctgggtccaatcctcttgacctatctgcctgcatccacttgtccccaccca 676
Query: 241 acagtcgaagagattatgatcgtctctcctcagtctcttcatctgaactgtgaccaactt 300
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 675 acagtcaaagagattatgatcatctctcctcagtctcttcatctgaactgtgaccaactt 616
Query: 301 atagggttcttgtgataaccacacaatgatggtgcttgacataatcttagatggtaccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atagggttcttgtgataaccacacaatgatggtgcttgacataatcttagatggtaccac 556
Query: 361 caataaatcttaaataaatggtgttttgtgtatttaagtatgagatgtccctctatgact 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 555 caataaatcttaaataaatggtcttttgtgtatttaagtatgagatgtccctctatgact 496
Query: 421 ga-catatacaaagagcactttttggttgaagtccaggcttttgcctagcagtgttgttt 479
|| | ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 495 gatc-tatacaaagagaactttttggttgaagtccaggcttttgcatagcagtgttgttt 437
Query: 480 gatgagaatccatagctttaggagctaaggcacagatggaagaagtaggccattggagcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gatgagaatccatagctttaggagctaaggcacagatggaagaagtaggccattggagcc 377
Query: 540 tctgtacccttgtactatatccagccttcacctctttctgcttcctcaacactaggaaat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tctgtacccttgtactatatccagccttcacctctttctgcttcctcaacactaggaaat 317
Query: 600 gagacagctttctgtgctcatgctgctgtgaggttctgctttccctcccgaccaaactcc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gagacagctttctgtgctcatgctgctgtgaggttctgctttccctcccgaccaaactcc 257
Query: 660 aggtgcttacaaccttggagtgaaacttcaggaaccataagttaaaaaatgaactt 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aggtgcttacaaccttggagtgaaacttcaggaaccataagttaaaaaatgaactt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no313_h21.g1 MSMg01no313_h21.g1 CHROMAT_FILE:
MSMg01no313_h21.g1 PHD_FILE: MSMg01no313_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:15 2005
(297 letters)
>mm_chr3_17591556_17592256
Length = 701
Score = 555 bits (287), Expect = e-162
Identities = 296/301 (98%), Gaps = 4/301 (1%)
Strand = Plus / Plus
Query: 1 tatggacttaacagctaagaattttgcaatggttattatcagtatattcaagatcttaaa 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatggacttaccagctaagaattttgcaatggttattatcagtatattcaagatcttaaa 260
Query: 61 gaaataagtgggcacaataaggggagggtaaattctaacaggaaacaactagtgagaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaataagtgggcacaataaggggagggtaaattctaacaggaaacaactagtgagaatt 320
Query: 121 ccagaatagaaaaacataacacctgaagaaaagtattagtaaattggtggattagatcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagaatagaaaaacataacacctgaagaaaagtattagtaaattggtggattagatcct 380
Query: 181 gtaggaaaaaaaaaaaaa----ctgagtttgagaacaaatataagaatctttgccagtct 236
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaggaaaaaaaaaaaaaaaaactgagtttgagaacaaatataagaatctttgccagtct 440
Query: 237 tttcatttgtgaatttaactcaatgaaagaaggtgtgccttgtaaaacaaagccctggtt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcatttgtgaatttaactcaatgaaagaaggtgtgccttgtaaaacaaagccctggtt 500
Query: 297 t 297
|
Sbjct: 501 t 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 701
Length adjustment: 9
Effective length of query: 288
Effective length of database: 692
Effective search space: 199296
Effective search space used: 199296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
