BAC Information

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BAC

Clone NameMSMg01-313O15
Chromosome3 (Build37)
Map Location 72,644,533 - 72,644,692
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313O15.T7 (MSMg01no313_o15.b1)MSMg01-313O15.TJ (MSMg01no313_o15.g1)
ACCAG435705AG435706
length1,3681,363
length of high quality
(start - end)
82 (44 - 125)161 (128 - 288)
definitionCHROMAT_FILE: MSMg01no313_o15.b1 PHD_FILE: MSMg01no313_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:10 2005CHROMAT_FILE: MSMg01no313_o15.g1 PHD_FILE: MSMg01no313_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCACTTTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTAGGAAGCTTAGGCCTCTTTCAAGGAACTTAAAAATTGCGTGTAT
GAAATAATTTTATTATTGTCCTATGACACCCAGTGATTGGGACCTACAAA
GATGAAAGGGGGTGTAGTGCTGAGATTTGGATTCTTCATGAGTGTCAAAG
CATGTAATTCCTGCATTTTATATTAACAAGAGAAAAAAAAACTGCTCATT
TTTGATTTCCGGTGACGAGAGTCTTCATCTGAAATCGCATTTCATAATCC
CTCTTTCAAACTGCTCTAATGTCCTCTCATTAAGCTTATAAGGAAACACT
TTTGTTTGCTTGGTTTTTTTTTATTGATCTAATGTTATCTATGCTAATTT
TTTTTTTTTACACATCAGGCACTCTTTTTTCTTTTTTTTAGGAGAAGAAC
TTTTTTTTTTTTTCCCCCCCCCCCGAAANNGNGNNCCCCACCAAAAAAAA
AAAAAGGGGGNCNNCNCCCCCCCNCCCCCCNNCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCNCGC
CCGGCCCGCCCGGCCGCCGGCNGCGCCCGCCCGCCCGCCCCGCGCCCCGG
CGGCGGCCGCTGCCGCCCCGCCCGCCGCGCCCCCCCCCCCGCGGCGCCGC
CGCGCCCCGCCCCCGCCCGCCCGGGGCCCGCCGCCCCCCCCCCCCGCGCG
CCCCGCGGCCCCCGCGCCCCGCCCCCCGCGGCGCCCCCCCGCTGCCCGGC
GCCGCCCTGTGTTTTTTTTTTTTCCTTCTTTTTTTTTTTATTTTCTTTTT
TTTTTTTTTTTTTTCTTCTTTCTTTTTTTTTTTCGTTTTTCTCTCTCTTC
TTTTTTTTTTTTTTTTTTTTCTTCTTTTTTCCTTTTTTCTTTTTCTGTCT
TCTTTTTTCTCTTTTTCTTTTCTTTTTCCTTTTTTTTTTTCTCTTTTTTC
TTTTGCTCTTTCTTTTTTCTTTGATTTTTTCATTATTTTTATTTACTATT
TATATTATTTTTATTTTTTATAATCTTTTTCTTATTTTTAATTATTTTTT
ACTTATATTATCTTTATTCTTCTCTTTTTTACTATTATGTTCATATATAT
CTTACTTTATACTTTTTTTTTTATCTTATATATTCTTTCCTTTTATTACT
TTCTATTTACTTGTTCTTCACTATTATATAATATTTATTCATTATACTTT
ATATTTTCTATTCCTCACTCTTTTTTTTTAATTTTATTCTTATATTTATA
TCTATTTTTTTCTTTCTTCTTCATTAGTATCTCATTATTTCTTCTTTTTT
TCTTCTTATACTTTTTTT
NNNGGATGATGAGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATAAAGGGTTCAGAGGGTGGGGTATGGAGT
CTAGCAGGAGTGCTTGCTTAGCCCGCCTGAGGTGAAGGATGCCTTCCCGT
ATAGTTGGGGAGAAGTGTAAAAAANAGAATAATGTAAAGAAGTCAGAATG
ATGCCAAGATCAGTATTATCAAGTAGTTTGTGTATGTGTGTATGTCCAGA
ATCGGGTACTGTGCTGATATAAGGTAAAACTGTTCTCAATTTAATAAAAA
TCAATTGAGTGCAGACTTAATGTTTATTGATATTTAAACCGTGATTGTTA
ATGAGACTGATTTATGATAAATTCTCATGGATGCCAGCTTCATTATTTTT
TTTTGGAAAAACCACCCAAAACGATTTTAGGGGAGGGGNGANAGTTTTTT
TTTTTTTTCCCCCCCCCCNNNNNNNNNNNCCCTTTTAAAAAAAAAAGGGG
GGGGNNNNNNNNNNNNNNNTNNNTTNTTTTTTTTTTTTTTTCTCCTTTTT
TTCTTTTTTTTTTTTCTTTTTTTTTCCTCCTTTTTTTTTTCTTTCTCTTT
CTTCTCTCCTTTCTTTTTTTTTTTTCTCTTTTTTTTTCTCTTCTTTTTTT
TTTTTTTTCTTTCTTCTTTTTTTTTTCTTTTTTTTTTTTTTNTTTTCTTT
TTTCTTTTTCTTTTTTTCTTTTCTTCTTCTTTCTTTTTTTTCTCTTTTTT
TTTTCTTTCTTTTTCTTTCTCCTTTTCTTTTTTTTCTCTTTTTTTTCCTT
TTTTTCTTCTCTTTTTTTTTTTTTTTTTTTCTTCTTTTTTCTCCCTTCTT
CTTTTTTTCTTTTTTTTTCTTTTTCTTTTCTTTCTTCTTCCTCTTTTTTT
TTTTTTTTCTTTCTTTTCTTTCTTTTTTTTCTTTCTCTTTTTTTCTCCTC
TTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTCTTCTCTCTTTTTTTTCCT
TCTTTTTTTTCTTTCTTCTTTCCTTTTTTTTTTCTTTCTTTCTTTTTCTT
TTTTTTTTCTTCTTCTTTTTTTTTTCTCTTCTTTCCCTTTCTCCTTCTTT
TTTTTTTTTTTTCTCCTCTCTTTTTTTTCTTTTTTTTTTTTTTTTCTTCC
TTTCCTTTTTTTCTCTCTTCTTTTCTTTTCTCCCTCTTTCTTCTTTTTCT
TTTTTTTTTTCTCTTTCTCCTTTTTTTTTTTTTTTCTTTTTTCCTTCCTT
TCTTTTCTCTTTTTTCTCTTTTCTTCTCTTCTTTTCTTTTCTCTTTTTTC
TTTTTTTTCCTTTTCTTTTTTTCTTCTTCCTTTCTTCCTTCTTTCTTTTC
TCTCTCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_o15.g1 MSMg01no313_o15.g1 CHROMAT_FILE:
MSMg01no313_o15.g1 PHD_FILE: MSMg01no313_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:10 2005
         (161 letters)



>mm_chr3_72644333_72644893
          Length = 561

 Score =  288 bits (149), Expect = 1e-82
 Identities = 157/160 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaggtgaaggatgccttcccgtatagttggggagaagtgtaaaaaanagaataatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 360 tgaggtgaaggatgccttcccgtatagttggggagaagtgtaaaaaacagaagaatgtaa 301

                                                                       
Query: 61  agaagtcagaatgatgccaagatcagtattatcaagtagtttgtgtatgtgtgtatgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaagtcagaatgatgccaagatcagtattatcaagtagtttgtgtatgtgtgtatgtcc 241

                                                   
Query: 121 agaatcgggtactgtgctgatataaggtaaaactgttctc 160
           ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 240 agaatcgggtactgtgctgatataaggcaaaactgttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)