Query= MSMg01no315_a16.b1 MSMg01no315_a16.b1 CHROMAT_FILE:
MSMg01no315_a16.b1 PHD_FILE: MSMg01no315_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:24 2005
(693 letters)
>mm_chr3_6640003_6641095
Length = 1093
Score = 760 bits (393), Expect = 0.0
Identities = 481/558 (86%), Gaps = 72/558 (12%)
Strand = Plus / Minus
Query: 208 atttgtcaattcttgatcttatagcacaagccattattgttctgttcaggaacttttccc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 atttgtcaattcttgatcttatagcacaagccattattgttctgttcaggaacttttccc 1034
Query: 268 ctgtgcccatatgtacaattttaaattcatcaatttcatcgtttctagcatttttgtaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 ctgtgcccatatgtacaattttaaattcatcaatttcatcgtttctagcatttttgtaaa 974
Query: 328 aattttgt---------------------------------------------------- 335
||||||||
Sbjct: 973 aattttgttactccattattacataataaatactattgttattacataataaattatata 914
Query: 336 --------------------tatatatacatatactcatatccttaaaaacatttaccct 375
|||||||| ||||||||||||||||||||||||||| |
Sbjct: 913 tatatataataaattatatatatatatatatatactcatatccttaaaaacatttatttt 854
Query: 376 ctttatctatttctccattcatgacttatttatattctgtaacttagcaattgtgcatca 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ctttatctatttctccattcatgacttatttatattctgtaacttagcaattgtgcatca 794
Query: 436 tgctatggtaagaatgagtgagaaagtatctccactatgtggtattcatagctcattgta 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tgctatggtaagaatgagtgagaaagtatctccactatgtggtattcatagctcattgta 734
Query: 496 aattattttaatcactatacttgacaggcataacttaaggaagcacacattcattttacc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aattattttaatcactatacttgacaggcataacttaaggaagcacacattcattttacc 674
Query: 556 acagtcttacatgagtataatatttattgtcaggaaagacacatagagcaattaaattca 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 acagtcttacatgagtataatatttattgtcaggaaagacacatagagcaattaaattca 614
Query: 616 tggcagaagaaaactgtggtagagtgctacacaaagagcttcagaaaagagaaaggtaat 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tggcagaagaaaactgtggtagagtgctacacaaagagcttcagaaaagagaaaggtaat 554
Query: 676 taangtctgctccagtga 693
||| ||||||||||||||
Sbjct: 553 taaggtctgctccagtga 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_a16.g1 MSMg01no315_a16.g1 CHROMAT_FILE:
MSMg01no315_a16.g1 PHD_FILE: MSMg01no315_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:24 2005
(665 letters)
>mm_chr3_6440133_6441200
Length = 1068
Score = 1168 bits (604), Expect = 0.0
Identities = 653/675 (96%), Gaps = 11/675 (1%)
Strand = Plus / Plus
Query: 1 attttaatgattagaatatttgttgcacataagctattagttaatgctgcgtaagacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttaatgattagaatatttgttgcacataagctattagttaatgctgcgtaagacaaa 260
Query: 61 cgctcccctgcatatttcaattattgctatggaaagcccta---tttttttttccagaat 117
| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 261 cactcccctgcatatttcaattattgctatggaaagccctatttttttttttttcagaat 320
Query: 118 tagcaaaacagatgctgggccattgatcaaaattcatttatgtaattttaggtcacccag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcaaaacagatgctgggccattgatcaaaattcatttatgtaattttaggtcacccag 380
Query: 178 gttcattctctcagcatgggttaaaaaacaacctctgcctttacattgaaaggtaatttg 237
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gttcattctctcagcatgggttaaaaaacaacctctgccttcacattgaaaggtaatttg 440
Query: 238 gggtgagcaatatcagtatgtgatgtgtctagaagttggggtatgttgcaacaatggttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgagcaatatcagtatgtgatgtgtctagaagttggggtatgttgcaacaatggttt 500
Query: 298 ggatattgtaagatgggtttccaccaaaaggcctttcatctgaaatgcccaagtttgtct 357
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 501 ggatattgtaagatgggtttccaccaaaaggccttttatctgaaatgttcaagtttgtct 560
Query: 358 taatttanaagtgaggatcaagtaagtcatgcttttaaaaaatggagcagcaaaatgttt 417
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 taatttagaagtgaggatcaagtaagtcatgcttttaaaaactggagcagcaaaatgttt 620
Query: 418 gagatgagggttttgtgttaatatgcactgggagatcttcagtaaatttagaaattacaa 477
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 621 gagatgagggttttgtgttaatatgcattgggatatcttcagtaaatttagaaattacaa 680
Query: 478 tgcttactgcagtcttagcaatggcatcttcagacaatgagagcaacagcatactgacat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcttactgcagtcttagcaatggcatcttcagacaatgagagcaacagcatactgacat 740
Query: 538 gagcttctggcagtgagaggtgagaactaactata-------ggttttgtttttattttt 590
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 gagcttctgtcagtgagaggtgagaactaactatatactgcaggttttgtttttattttt 800
Query: 591 ttgtctcaagctatagggtgagtatatagggtgaattttttgctatagtagcaaaaaaac 650
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 t-gtctcaagctatagggtgagtatatagggtgaattttttgctatagtagcaaaaaaac 859
Query: 651 tgtgctaccagctag 665
|||||||||||||||
Sbjct: 860 tgtgctaccagctag 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1068
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1058
Effective search space: 692990
Effective search space used: 692990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
