Query= MSMg01no315_b18.b1 MSMg01no315_b18.b1 CHROMAT_FILE:
MSMg01no315_b18.b1 PHD_FILE: MSMg01no315_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:29 2005
(694 letters)
>mm_chr3_120506072_120507165
Length = 1094
Score = 1280 bits (662), Expect = 0.0
Identities = 683/690 (98%)
Strand = Plus / Minus
Query: 5 gaattcagaagctatgccgtccagtgagtgttgagactacagcaggaagggaatatttga 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gaattcagaagctaggttgtccagtgagtgttgagactacagcaggaagggaatatttga 835
Query: 65 gggaatctagtttctttggagtttctaattccttggtaaactccaaaagagtctagggaa 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ggggatctagtttctttggagtttctaattccttggtaaactccaaaagagtctagggaa 775
Query: 125 tgtgcgttaactgtgattctaagaggagaggaaagggggtgaatttatctgaaaaccttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tgtgcgttaactgtgattctaagaggagaggaaagggggtgaatttatctgaaaaccttc 715
Query: 185 tggcaaatgattggattaatgagaaccagtagtgacgtcaactgactcatagggatatat 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 714 tggcaaatgattggattaatgagaaccagtagtgatgtcaactgactcatagggatatat 655
Query: 245 gtgttctcagagtcagagatgagacagctggcgtattgttggtgtgcagctggatagcta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gtgttctcagagtcagagatgagacagctggcgtattgttggtgtgcagctggatagcta 595
Query: 305 ctccagaagggtgcctgattgcatgattacactttcctagtggcttatttcctgaaggtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctccagaagggtgcctgattgcatgattacactttcctagtggcttatttcctgaaggtg 535
Query: 365 cactgtacccatccataatgggcatggagtcattcagtgtctatagtcaaggtgtgaaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cactgtacccatccataatgggcatggagtcattcagtgtctatagtcaaggtgtgaaac 475
Query: 425 tcaacaacatgagatagcaagtatcgtgttcaatatcatgaggctctcttcttcctggta 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 474 tcaacaacatgagatagcaagtatcgtgttcaatgtcatgaggctctcttcttcctggta 415
Query: 485 atataggatctgaagagctcattgagtattgagcacattcatttgtaaaagatgcagacc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atataggatctgaagagctcattgagtattgagcacattcatttgtaaaagatgcagacc 355
Query: 545 aggtggactcagcagaaagggatgcagtgatgttaacatgcatactccatttgtaggcaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aggtggactcagcagaaagggatgcagtgatgttaacatgcatactccatttgtaggcaa 295
Query: 605 aaagaagaatggcatgaggacaaggccagtatttagcacttgcgtggaaatggatactag 664
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 294 aaagaagaatggcatgaggacaaggccagtatttagcacttgggtggaaatggatactag 235
Query: 665 ttagcaaagagagaatgagccaggctatac 694
||||||||||||||||||||||||||||||
Sbjct: 234 ttagcaaagagagaatgagccaggctatac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_b18.g1 MSMg01no315_b18.g1 CHROMAT_FILE:
MSMg01no315_b18.g1 PHD_FILE: MSMg01no315_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:29 2005
(613 letters)
>mm_chr3_120449303_120450315
Length = 1013
Score = 1116 bits (577), Expect = 0.0
Identities = 604/617 (97%), Gaps = 8/617 (1%)
Strand = Plus / Plus
Query: 1 attactcttagttacctggtaggctcgcagtagtcataaggtcctgtgagagggcaaggc 60
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attactcttagctatctggtaggctcgcagtagtcataaggtcctgtgagagggcaaggc 260
Query: 61 aggagaatcaggatcataaaggactggcaattcaacaatgagaacagaaagcctgagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagaatcaggatcataaaggactggcaattcaacaatgagaacagaaagcctgagtct 320
Query: 121 aagagaaatttaccaggtccccaaagacgtgtgagcattagtcctcaagacggagaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagaaatttaccaggtccccaaagacgtgtgagcattagtcctcaagacggagaaagc 380
Query: 181 cacaaacagagggatatgctaggtctctggaatcctgacaagacaaggaaacatattggc 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 cacaaacagagggatatgctaggtctctggaatcctgacaagacaaagaaacatattggc 440
Query: 241 agtcagagcccagtggctgcatggatttgccaattccttgattcaggccc----acccca 296
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 441 agtcagagcccagtggctgcatggatttgccaattccttgattcaggcccagtaa----a 496
Query: 297 acctattttggatgtatattgcacggtaaaatgtagccccagggtagcctcaaattcact 356
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acctattttggatgtacattgcacggtaaaatgtagccccagggtagcctcaaattcact 556
Query: 357 agatagccaaggatgaccttcaacttctcaatttcccctttgtcctcttcctaagaactg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agatagccaaggatgaccttcaacttctcaatttcccctttgtcctcttcctaagaactg 616
Query: 417 ggattgcagatgtgcatccccacacctggcttagaatggtctgagaattaagctcagagt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggattgcagatgtgcatccccacacctggcttagaatggtctgagaattaagctcagagt 676
Query: 477 ttatgcctgccagacactgtaccaatggtgatgactgccagacactgcatcaaccgagct 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 677 ttatgcctgccagacactgtaccaatgatgatgactgccagacactgcatcaaccgagct 736
Query: 537 acaacctagccccaatttgggctcaggactttgtaaccttgatggtttatcatcctggtc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 acaacctagccccaatttgggctcaggactttgtaaccttgatggtttatcatcctggtc 796
Query: 597 aacttatctggatccag 613
|||||||||||||||||
Sbjct: 797 aacttatctggatccag 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
