Query= MSMg01no315_e02.b1 MSMg01no315_e02.b1 CHROMAT_FILE:
MSMg01no315_e02.b1 PHD_FILE: MSMg01no315_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:40 2005
(690 letters)
>mm_chr3_14267806_14268893
Length = 1088
Score = 1237 bits (640), Expect = 0.0
Identities = 674/688 (97%), Gaps = 6/688 (0%)
Strand = Plus / Minus
Query: 5 gaattcctaaatgtcactaagatgattaagtagcatcataaaacctacaaaatcaccaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 gaattcctaaatgtcactaagatgattaagtagcatcataaaacctacaaaatcaccaac 829
Query: 65 aaaatatttcattagtaacttcatgaaagaataataagcatagtagaccagtttcactta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aaaatatttcattagtaacttcatgaaagaataataagcatagtagaccagtttcactta 769
Query: 125 ttgaat--agttaaaaaaataagtacagcaaataataacattttatcttggaatgccctg 182
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttgaataaagttaaaaaaataagtacagcaaataataacattttatcttggaatgccctg 709
Query: 183 tgtttatttgtgagacagcatttcttcatgtctgcttgggtagaccatttggtttgtaac 242
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 708 tgtttatttgtgggacagcatttcttcatgtctgcctgggtagaccatttggtttgtaac 649
Query: 243 accactgtgtggtatggagggatatgacaaaagagatataaggatagaaaagtaaacatg 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 648 accactgtgtggtatggagggatatgacaaaagagatatgaggatagaaaagtaaacatg 589
Query: 303 gaatgcaaagaaaagttcaaaacagaatgagaagacacgggaaaatagatgggagacagt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 588 gaatgcaaagaaaagttcaaaacagaatgagaagacacgggaaaatagatgggaggcagt 529
Query: 363 gggcataggtggctccgctaactgaaaaaattgtgagcttttgtaaagtagtggtggagg 422
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gggcataggtggctttgttaactgaaaaaattgtgagcttttgtaaagtagtggtggagg 469
Query: 423 agtgtgagaaattcaatgatagttggtaacaccaggtgtagctctatgcagcccaatgtc 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 468 agtgtgagaaattcaatgataggtggtaacaccaggtgtagctctatgcagcccaatgtc 409
Query: 483 attgtgatatcagggtctgtgtgtgatggttttatttaaagagagagaaaagtaatatat 542
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 408 attgtgatatcagggtctgtgtgtgatggt----tttaaagagagagaaaagtaatatat 353
Query: 543 tttccttactcactgcaaggtttcaatggctgatacacctataatcatagagtaacaaaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tttccttactcactgcaaggtttcaatggctgatacacctataatcatagagtaacaaaa 293
Query: 603 gaaaaaactgacaaatacatattaagtaaaaatgtcttctttaaaaagcaattgaggtgg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaaaaaactgacaaatacatattaagtaaaaatgtcttctttaaaaagcaattgaggtgg 233
Query: 663 taacggcatgaggagatttgctacatcg 690
||||||||||||||||||||||||||||
Sbjct: 232 taacggcatgaggagatttgctacatcg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1088
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1078
Effective search space: 733040
Effective search space used: 733040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_e02.g1 MSMg01no315_e02.g1 CHROMAT_FILE:
MSMg01no315_e02.g1 PHD_FILE: MSMg01no315_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:40 2005
(613 letters)
>mm_chr3_14121197_14122209
Length = 1013
Score = 992 bits (513), Expect = 0.0
Identities = 591/623 (94%), Gaps = 10/623 (1%)
Strand = Plus / Plus
Query: 1 tgagcgaagtgaaaaattctggtgttaatattgatataatctaagtagttgtttactgaa 60
|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 191 tgagtgaagtgaaaaattctggtgttaatattgatagaatctgagtagttgtttactgaa 250
Query: 61 ctgtttatatttgtcatttttaataggcattttacattatttaatggattggcacctttt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 251 ctgtttatatttgtcatttttaataggcattttgcattatttaatggattggcacctttt 310
Query: 121 catatttaaatatcatttaagctcaatagtaaatatgtcttgataatgtttgcttacaga 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 311 catatttaaatatcatttaagttcaatagtaaatatgtcttgataatgtttgcttacaca 370
Query: 181 atagagtgaatacagagagtggctatgtacatacaaatagatacacaatatatagtcctg 240
|||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct: 371 atagagcgaatacagagagtggttatatacatacaaatagatatacaatatatagtcctg 430
Query: 241 tatatgaaacgtgtattttgtctgtgcagtatatgaaatgctatgtgatatgtgtg---- 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 catatgaaacgtgtattttgtctgtgcagtatatgaaatgctatgtgatatgtgtgtgtg 490
Query: 297 ------tgtttatgtttatcttcaatgactttacaaaatgcatacatatgttaaatcata 350
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 491 tgtgtatgtttatgtttgtcttcaatgactttacaaaattcatacatatgttaaatcata 550
Query: 351 ttattctatattattaattacatcattttctgtgtattggctaaaaaaattaaagtttta 410
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 551 ttattctatattgttaattatgtcattttctgtgtattggctaaaaaaattaaagtttaa 610
Query: 411 aaaattcgaagagtttaatgaaattagacttttatgtatattttagtttcttttaaaatt 470
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 611 aaaattcggagagtttaatgaaattagacttttatgtatattttagtttctttttaaatt 670
Query: 471 gctaaaactaaaactgtgaccaacctgtctagccatcaatcaaaagcatagcataaagtt 530
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 671 gctaaaactaaaactgtgaccaacctgcctagccatcaatcaaaagcatagcataaagtt 730
Query: 531 ttgtgattaaagataatccccttataaatatgatggcataagaaatctcttctcaggaaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 731 ttgtgattaaagataatccccttataaatatgatggcataagaaatctcttctcaagaaa 790
Query: 591 agaaccaactagttaacatattc 613
||||||||||||| |||||||||
Sbjct: 791 agaaccaactagtcaacatattc 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
