Query= MSMg01no315_f13.b1 MSMg01no315_f13.b1 CHROMAT_FILE:
MSMg01no315_f13.b1 PHD_FILE: MSMg01no315_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:47 2005
(330 letters)
>mm_chr3_87975498_87976230
Length = 733
Score = 590 bits (305), Expect = e-173
Identities = 324/331 (97%), Gaps = 3/331 (0%)
Strand = Plus / Plus
Query: 3 gaattctcta-ccccattcccgtcccagaaagagggaagaagggagggatgggccagcca 61
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctacccccattcaagtcccagaaagagggaagaagggagggatgggccagcca 262
Query: 62 agagctgacccgtcccccaacttgacaatcacccacactcctggctcctgggtctgggtg 121
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagctgacccgtccccaaacttgacaatcacccacactcctggctcctgggtctgggtg 322
Query: 122 agtccaagtgtgtggctgttggtttgttttcattatttctttccgtgctgtacggtgatg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtccaagtgtgtggctgttggtttgttttcattatttctttccgtgctgtacggtgatg 382
Query: 182 ctttctagtattctgcacattaagaaaagtcctcgagattcttacgagtttggtttgaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctttctagtattctgcacattaagaaaagtcctcgagattcttacgagtttggtttgaaa 442
Query: 242 actctttcactatatttgttgtaaagaggtttactattataagaaaaaaaaaaa--catg 299
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 443 actctttcactatatttgttgtaaagaggtttactattaaaagaaaaaaaaaaaaacatg 502
Query: 300 tttctgatacctcagtttgggttttgatttc 330
|||||||||||||||||||||||||||||||
Sbjct: 503 tttctgatacctcagtttgggttttgatttc 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 733
Length adjustment: 9
Effective length of query: 321
Effective length of database: 724
Effective search space: 232404
Effective search space used: 232404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_f13.g1 MSMg01no315_f13.g1 CHROMAT_FILE:
MSMg01no315_f13.g1 PHD_FILE: MSMg01no315_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:47 2005
(344 letters)
>mm_chr3_88131804_88132547
Length = 744
Score = 317 bits (164), Expect = 5e-91
Identities = 182/192 (94%), Gaps = 8/192 (4%)
Strand = Plus / Minus
Query: 157 tgggccccccaccctccgacagtctgagacactgcccttccctctggagagtgggtttca 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgggccccccaccctccgacagtctgagacactgcccttccctctggagagtgggtttca 485
Query: 217 gtttatggactggtactcagaataccgcctgtg----ttttatcagcagaaataggcctc 272
||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 484 gtttatggactggtactcagaataccgcctgtggcgc----agcagcagaaataggcctc 429
Query: 273 cccccaggaacatgagtcctggggctcccagggctaccgccatgattccgagaactagtg 332
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 428 cccccaggaacatgagtcctggggctcccagggctaccgccatgattccgaggactagtg 369
Query: 333 gagagaagatat 344
||||||||||||
Sbjct: 368 gagagaagatat 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
