Query= MSMg01no315_i04.b1 MSMg01no315_i04.b1 CHROMAT_FILE:
MSMg01no315_i04.b1 PHD_FILE: MSMg01no315_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:00 2005
(654 letters)
>mm_chr3_58697944_58698996
Length = 1053
Score = 1205 bits (623), Expect = 0.0
Identities = 641/647 (99%), Gaps = 1/647 (0%)
Strand = Plus / Minus
Query: 5 gaattcagttactttctcaaatcctgaaagctcttcctctgtaaaggcaccgtaaagtgc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gaattcagttacgttctcaaatcctgaaagctcttcctctgtaaaggcaccgtaaagtgc 791
Query: 65 ttgcactctttacagaggaggtttgcagtgcactctgtgtttcatgttgttgttcaatgt 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttgcactctttagagaggaggtttgcagtgcactctgtgtttcatgttgttgttcaatgt 731
Query: 125 ttcccaagaccaaaatattgctacacaatgcccaagggtaaggtacaagtaattaaattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttcccaagaccaaaatattgctacacaatgcccaagggtaaggtacaagtaattaaattg 671
Query: 185 ataaatctttttactggcaactctccaagagtacaggtacattcataccccagagttaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ataaatctttttactggcaactctccaagagtacaggtacattcataccccagagttaaa 611
Query: 245 aataaaatacattctctttggtatttaatgccctggaagtgccaaacagccttgtgtttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aataaaatacattctctttggtatttaatgccctggaagtgccaaacagccttgtgtttg 551
Query: 305 tatgtatatcaacttgtagttggggaattcgttacagaaaatgtactctcttgtggcctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatgtatatcaacttgtagttggggaattcgttacagaaaatgtactctcttgtggcctg 491
Query: 365 gataatattactcctacaaattaaaaataaggaaaatgtcaccaagacatgaagaaacaa 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gataatattacttctacaaattaaaaataaggaaaatgtcaccaagacatgaagaaacaa 431
Query: 425 cttaaattgcgtgtgaagccatggttgaggaaccttccctaccatgcacctgtatgtaca 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 430 cttaaattgcgtgtgaagccatggttgaggaaccttccctaccatacacctgtatgtaca 371
Query: 485 tatatacccatgccatgccccccccacatacacatacactaaaagccattaaaaatttca 544
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 370 tatatacccatgccatg-cccccccacatacacatacactaaaagccattacaaatttca 312
Query: 545 gaaggggcctgcttttatatagaactacaataaattacaatgctcacaataatttatgaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gaaggggcctgcttttatatagaactacaataaattacaatgctcacaataatttatgaa 252
Query: 605 tattcctacagagaattcataagttgggagcttctaccattaattaa 651
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tattcctacagagaattcataagttgggagcttctaccattaattaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1053
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1043
Effective search space: 671692
Effective search space used: 671692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_i04.g1 MSMg01no315_i04.g1 CHROMAT_FILE:
MSMg01no315_i04.g1 PHD_FILE: MSMg01no315_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:00 2005
(581 letters)
>mm_chr3_58637446_58638423
Length = 978
Score = 955 bits (494), Expect = 0.0
Identities = 560/586 (95%), Gaps = 13/586 (2%)
Strand = Plus / Plus
Query: 1 agtcacagactgattcctaactatacagaatatgggctgaagagctttctagatgcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcacagactgattcctaactatacagaatatgggctgaagagctttctagatgcatta 260
Query: 61 agcagatagaaatgaaaactcataagactgaggcttctctttcttgtctgaatattgata 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 261 agcagatagaaatgaaaactcataagactgaggcttctccttcttgtctgaatattgaca 320
Query: 121 cctgtatatggagaagagaaaacagggacttgtagtgagaggctgtacaaaaacatgtgg 180
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cctgtatatggagaagaaaaaacagggacttgt---gagaggctgtacaaaaacatgtgg 377
Query: 181 cgtctgagacacaaaatggctggttaggacactggccagaaagtacctcagtgccaggag 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cgtctgagacacaaaatagctggttaggacactggccagaaagtacctcagtgccaggag 437
Query: 241 ggctgttctccgccctgactccaccccaccacaggtctcagcactttcgaatggggaggg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggctgttctcctccctgactccaccccaccacaggtctcagcactttcgaatggggaggg 497
Query: 301 ggcacagcattccctgggaacagttcctctgttgtggttatgtacg---ccctcaccgag 357
|||||||||||||||||||||||||||||||||||||||||||| | | |||| |||
Sbjct: 498 ggcacagcattccctgggaacagttcctctgttgtggttatgta-gtttc--tcactgag 554
Query: 358 gtcttata--ttggctctgagctatgagatgtgctgatatagacactggaataacagact 415
|||| | | ||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 555 gtct-a-aggttggctctgagctatgagatgtgctgatataaacactggaatagcagact 612
Query: 416 tatttctgagggcccatagggactgagaaacttcgagaataaaatgggagggacttgagg 475
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 613 tatttctgagggcccatagggactgagaaacttcgagaataaaatgggaggaacttgagg 672
Query: 476 gagagggcatgggttcattctctgttaggaggggctattaagatccatgaaaggctacaa 535
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gagagggtatgggttcattctctgttaggaggggctattaagatccatgaaaggctacaa 732
Query: 536 tgcttgttctctgtgtgtacctcctatagaagccaggtgtgatggc 581
||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct: 733 tgcttgttctctgtgtgcacatcctctagaagccaggtgtgatggc 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 978
Length adjustment: 10
Effective length of query: 571
Effective length of database: 968
Effective search space: 552728
Effective search space used: 552728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
