BAC Information

Click to search

BAC

Clone NameMSMg01-315K08
Chromosome3 (Build37)
Map Location 146,214,325 - 146,214,878
singlet/doubletsinglet
Overlap genenone
Upstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5
Downstream geneLOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315K08.T7 (MSMg01no315_k08.b1)MSMg01-315K08.TJ (MSMg01no315_k08.g1)
ACCAG436230AG436231
length744752
length of high quality
(start - end)
698 (44 - 741)554 (76 - 629)
definitionCHROMAT_FILE: MSMg01no315_k08.b1 PHD_FILE: MSMg01no315_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:11 2005CHROMAT_FILE: MSMg01no315_k08.g1 PHD_FILE: MSMg01no315_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCACGCAGTTGACTCCTTCTCAACAGTCTGTGTTGCGGGAACACTTC
ATTACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCC
TTCTCAACAGTCTGTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTC
TGGTTCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCA
GGTTTTCTCGTCCCGGGATTTCTCGTCCCAGGTCTTCTCGTCCCGGGTCT
TCTCGTCCTGGGTCTTCTCGTCCCGGGTTTCGGCACCAACTCTTACACGC
GTTCTCACGACCGGCCAGGAAGAACGCAACAAACCGGAATCTTCTGCGGC
AAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGCAAGAGAGCAAGAG
CGAGGGCAAGAGCGCAAGAGCGCAAGAGCTTTATTGCTTACATCTTCAGG
AGCAAGAAGCAAGAGCCAGAGCAAGAGAGAGCAAGAGTGCAAGAGCCAGA
GCAAGAGAGAGAAAGAGTGCAAGAGCCAGAGCAAGAGAGAGAATATGGCG
AAACCCCATCCCCTTTAAGGAGAATTATTCTCCGCCTAGGACGTATTACT
CCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAG
AGCACATGTAGTGGAAAACTACCCTTGGCACATGCGCAGATTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTATTGTAATAGCCCTGTATATGT
TGTGGCAGAATTGGTGGTTGTCCTACTTAGACACGTGTTGGTTGCATTTG
GGGTTCAACACAGACAGCAGCCCTTAAAGAAAAAGAGGGTGCTCACAATT
TCTCCTTACGACTTTGCTTTTCAAGTCATGACAGTTGTTCAATTAGTGAA
GGAAGTTGGGTGGGGGAGGTCTCTTTAAGCAACCAAAACAAGGAGGGCTA
GTCCACCCTCCACATGGGAGTCTGATGGACAAGTGAACTACCCTAGGTGT
CTGCTCTGCAAACAGCCTGCTTAGGAAGGGAGTCGCCCTAGCAGAAGCCT
TGTGTTTCTTCCCAGTGGCTGCCCTCCCTCTGACTCCACTCTTCCTGTGA
ACACTAGGTAGTTCTTCAGTCCTAGTCTTTCCCACACTGGTTAGCAGTAT
GGGTTTAGAGGTGGACAGAACTGACTTTGTACCAATTACTAATGTATCAT
TACTTAACCTCCCCCATCCTTAGTCACCGTTCTGGTAAGATGGGAAGGAA
CCCACAGAATTGTGGGAATTCAATGACACAAACTATGCAAAGTTCTCAGG
TAAGTGCTTACCATATAGTGTGAGTTCAACCCACAGTGGCAATTGTCACT
TCTTCCTTCTTCCCTAACCCATTTCCTTCTAGCAGGTTCACCCTTCTACA
GT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_k08.g1 MSMg01no315_k08.g1 CHROMAT_FILE:
MSMg01no315_k08.g1 PHD_FILE: MSMg01no315_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:11 2005
         (554 letters)



>mm_chr3_146214125_146215078
          Length = 954

 Score = 1002 bits (518), Expect = 0.0
 Identities = 545/554 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctattgtaatagccctgtatatgttgtggcagaattggtggttgtcctacttagacacg 60
           ||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct: 201 cctattgtaatagccctgtatatcttgtggcagaattggtagttgtcatacttagacacg 260

                                                                       
Query: 61  tgttggttgcatttggggttcaacacagacagcagcccttaaagaaaaagagggtgctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttggttgcatttggggttcaacacagacagcagcccttaaagaaaaagagggtgctca 320

                                                                       
Query: 121 caatttctccttacgactttgcttttcaagtcatgacagttgttcaattagtgaaggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatttctccttacgactttgcttttcaagtcatgacagttgttcaattagtgaaggaag 380

                                                                       
Query: 181 ttgggtgggggaggtctctttaagcaaccaaaacaaggagggctagtccaccctccacat 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagtgggggaggtctctttaagcaaccaaaacaaggagggctagtccaccctccacat 440

                                                                       
Query: 241 gggagtctgatggacaagtgaactaccctaggtgtctgctctgcaaacagcctgcttagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggagtctgatggacaagtgaactaccctaggtgtctgctctgcaaacagcctgcttagg 500

                                                                       
Query: 301 aagggagtcgccctagcagaagccttgtgtttcttcccagtggctgccctccctctgact 360
           |||||||| |||| ||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 501 aagggagttgccccagcagaagccttgtgtttcttcccagtggctgggctccctctgact 560

                                                                       
Query: 361 ccactcttcctgtgaacactaggtagttcttcagtcctagtctttcccacactggttagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccactcttcctgtgaacactaggtagttcttcagtcctagtctttcccacactggttagc 620

                                                                       
Query: 421 agtatgggtttagaggtggacagaactgactttgtaccaattactaatgtatcattactt 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 agtatgggtttagaggtggacagaactgactttgtaccgattactaatgtatcattactt 680

                                                                       
Query: 481 aacctcccccatccttagtcaccgttctggtaagatgggaaggaacccacagaattgtgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacctcccccatccttagtcaccgttctggtaagatgggaaggaacccacagaattgtgg 740

                         
Query: 541 gaattcaatgacac 554
           ||||||||||||||
Sbjct: 741 gaattcaatgacac 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)