Query= MSMg01no315_m04.b1 MSMg01no315_m04.b1 CHROMAT_FILE:
MSMg01no315_m04.b1 PHD_FILE: MSMg01no315_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:20 2005
(346 letters)
>mm_chr3_107034178_107034923
Length = 746
Score = 586 bits (303), Expect = e-172
Identities = 332/347 (95%), Gaps = 11/347 (3%)
Strand = Plus / Minus
Query: 1 ctcttctcttgcatacttgggatattcaattttcaacctcgggcaataactccttgaatg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 437 ctcttctcttgcatacttgggatattcaattttcaacctcgggcaacaactccttgaatg 378
Query: 61 gaagttctaattatacatgggattagtagcacccaagtggccaggatggggtgccagtct 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaagttctgattatacatgggattagtagcacccaagtggccaggatggggtgccagtct 318
Query: 121 gttgtgactgtggtgtctttaaatgaacat-gaggattgttttttccttccctggagggc 179
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct: 317 gttgtgactgtggtgtctttaaatgaac-tcgaggattgtttttcccttccctggagggc 259
Query: 180 actgccctgcccaccttggcaggagcagagaatctaatatagagttaacggacacctaca 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 258 actgccctgcccaccttggcaggagcagagaatctaatatagagttaatggacaccta-- 201
Query: 240 ggatacagtcctgcctgtatctctgagctggttgtacccctgttaggatcttgtcatgca 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 -------gtcctgcctgtatctctgagctggttgtacccctgttaggatcttgtcatgca 148
Query: 300 tggtgagcactaggcaggagcgaggctgtgatatatgaagcacaccc 346
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tggtgagcactaggcaggagcgaggctgtgatatatgaagcacaccc 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_m04.g1 MSMg01no315_m04.g1 CHROMAT_FILE:
MSMg01no315_m04.g1 PHD_FILE: MSMg01no315_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:20 2005
(346 letters)
>mm_chr3_106877652_106878399
Length = 748
Score = 619 bits (320), Expect = 0.0
Identities = 339/346 (97%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 1 atagttttgactagaacaggggagcagatgcctgggag--gccttctgcccctccctaaa 58
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 201 atagttttgactagaacaggggagcagatacctgggagcagccttctgggcctccctaaa 260
Query: 59 attgaacaagtggaggcagtgcctatgatgaacagggctagaagaggctgctaccaccca 118
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgaacaagtagaggcagtgcctatgatgaacagggctagaagaggctgctaccaccca 320
Query: 119 gctctcattcgctagaacatagcaagatgaagctagcttgtcagatttttatattcttca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctcattcgctagaacatagcaagatgaagctagcttgtcagatttttatattcttca 380
Query: 179 agaaagcctataaaatgaatttgtaatacagatttttccaattcatattagcaataaatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaagcctataaaatgaatttgtaatacagatttttccaattcatattagcaataaatg 440
Query: 239 caaattttcaagatgactctggaagcctacattgaaagactcctctaagcacatctgtga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaattttcaagatgactctggaagcctacattgaaagactcctctaagcacatctgtga 500
Query: 299 gcaaggttgccaatagtaacccattgtggctcacctctagagccta 344
||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 gcaaggttgccaatagtaacccattttggctcacctctagagccta 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 748
Length adjustment: 9
Effective length of query: 337
Effective length of database: 739
Effective search space: 249043
Effective search space used: 249043
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
