BAC Information

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BAC

Clone NameMSMg01-315P10
Chromosome3 (Build37)
Map Location 33,168,809 - 33,169,165
singlet/doubletsinglet
Overlap genenone
Upstream geneZmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315P10.T7 (MSMg01no315_p10.b1)MSMg01-315P10.TJ (MSMg01no315_p10.g1)
ACCAG436451AG436452
length730721
length of high quality
(start - end)
349 (64 - 412)345 (57 - 401)
definitionCHROMAT_FILE: MSMg01no315_p10.b1 PHD_FILE: MSMg01no315_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:35 2005CHROMAT_FILE: MSMg01no315_p10.g1 PHD_FILE: MSMg01no315_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTC
TCAACTGAGCCATACTGAATGGCCGAGAATCATCTAAAGAAATTTTCAAC
ATTCTTAGTTGTCAGGGAAATGCAAATCAAAACAACTCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAATACTCAAGTGACAACAGATGC
TGGTGAGGATGTAGATAAAGAGGAACACTCCTCCATTGCTGGCGGGATTG
CAAGCTTGTACAACCACTATGGAAATCAGTTTGGCAGTTCCTCAGAAAAC
TAGAAATAGTACTATTGTATGACCCAACTATACCACTCCTGGGCATACAC
CCAGAAGATGCTCCAACATGTAATAAGGATACATGTTCCACTATGTTCGT
AGAAGCCTTACCCACCCAGCCAGAAGTGGAGAAGAACCCAGATGTCCCTC
AACAGATTAATGGTTATAGAGAATGTGGTACATTAATACAATGGAGTACT
ACACAGCTATTAAAAACAATGAATTTCTGAAATTCCTAGGCAAATAGATG
GAACTAACCCAATCACAAAAGAACACACATGATATACATTCACTGATAAG
TGAATATTAGTCCAGAAGCTCGGAATACTCAAGATAGAATTCACAGACCA
CATGAAACTCATGCAGAAAGATGGCCAAAGTTTGGTTACTTACATCCTTA
GAAGGCGAAAAAATATGCCCTTGGTAGGAG
TGGCGGCCGCCTGGTACACAAAAGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGGCAGGCCTCCTTGGAACTTTAAAAAAGGTTGTACTCAGAATT
AATTACGCAATGAACCAGAGCAGGTCACCAAGGTCAATGAAGGCAAAGTG
CAGTTCAACACTTAGCTTAGAGGACAGATTCCAGAGAAGGACAACCTAAG
GGCTCTGATGGGGGGCTGTGATGGGAGAGAGCACGTGCTCCCTCAGCGAG
CTTGGCGTAGGTAATGTGATAAATCACAAGAGAGCAAAACAAACAAGAGA
AAAATGTACATGAAAGAAACTAAATTGCGCTAAGTTGCCCCATTCAGCAG
AGCGTAAATGGGACTGATGAGTCTGAAGTTGGAGGCACCAGATGATGCCC
CACCCAGTGCAAGCATGCATCACAGAGCTTGAGGTCCCTGAGAACCACAT
GGTAGACGGAGAGAAACCTTCTGACCATCAGACACATGCTGTGCTGTGCT
CCTACCAATATATACACTTCAATACAAATGACTAGCATAAATATTTTAAA
AATGAGCTTGGACCAGCGATCCAGTGACCTATTTTGAAAGTCATCTTTGC
GTTTCAACTTTTAGAATATTTTCTTTTATAGGAAAGCCCTGGAACAAATA
TTATAGAATTGCATAAACGTTTTTAAAATGATACCCATTTAAGTATTGGG
AGCCGTGGTTTTACTTGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_p10.g1 MSMg01no315_p10.g1 CHROMAT_FILE:
MSMg01no315_p10.g1 PHD_FILE: MSMg01no315_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:35 2005
         (345 letters)



>mm_chr3_33168609_33169353
          Length = 745

 Score =  601 bits (311), Expect = e-176
 Identities = 338/357 (94%), Gaps = 16/357 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcaggcctccttggaactttaaaaaaggttgtactcagaattaattacgcaatgaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aggcaggcctccttggaactttaaaaaaggttgtactcagaattaattaggcaatgaacc 260

                                                                       
Query: 61  agagcaggtcaccaaggtcaatgaaggcaaagtgcagttcaacacttagcttagaggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcaggtcaccaaggtcaatgaaggcaaagtgcagttcaacacttagcttagaggaca 320

                                                                       
Query: 121 gattccagagaaggacaacctaagggctctgatggggggctgtgatgggagagagcacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattccagagaaggacaacctaagggctctgatggggggctgtgatgggagagagcacgt 380

                                                                       
Query: 181 gctccctcagcgagcttggcgtaggtaatgtgataaatcacaagagagcaaaacaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gctccctcagcgagcttggcgtaggtaatgtgataaatcacaagagagcaaaacaaacag 440

                                                                       
Query: 241 gagaaaaatgtacatgaaagaaactaaa----------------ttgcgctaagttgccc 284
           ||||||||||||||||||||||||||||                ||||| ||||||||||
Sbjct: 441 gagaaaaatgtacatgaaagaaactaaagaggtagccatctaaattgcggtaagttgccc 500

                                                                    
Query: 285 cattcagcagagcgtaaatgggactgatgagtctgaagttggaggcaccagatgatg 341
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattcagcagagcgtaaatgggactgatgagtctgaagttggaggcaccagatgatg 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)