Query= MSMg01no316_a05.b1 MSMg01no316_a05.b1 CHROMAT_FILE:
MSMg01no316_a05.b1 PHD_FILE: MSMg01no316_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:39 2005
(691 letters)
>mm_chr3_144552624_144553716
Length = 1093
Score = 1272 bits (658), Expect = 0.0
Identities = 680/688 (98%), Gaps = 2/688 (0%)
Strand = Plus / Plus
Query: 6 aatgtacaggaaacacacaaccaggttatataatagtttttttt--ccggtttggtaatg 63
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 206 aatgtacaggaaacacacaaccaggttatataatagttttttttttccggtttggtaatg 265
Query: 64 gttaaagtgatcagaaaattataaaatacatagcatcctctcttcttgagacataataca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttaaagtgatcagaaaattataaaatacatagcatcctctcttcttgagacataataca 325
Query: 124 ttgctttccattttcagttaatttcctaagcatacacacagaggttgtgaccctatataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttgctttccattttcagttaatttcctaagcatacacacagaggttgtgaccctatataa 385
Query: 184 tagcgtcataaaataaaaccacaataaattgtacagaaattctaaagtcctgtctccatt 243
||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 386 tagcgtcataaaataaagccacaataaattgtagagaaattctaaagtcctgcctccatt 445
Query: 244 ttaaagagcaaatcacttattacctattctctctgtcatctatacaatagtgatacaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttaaagagcaaatcacttattacctattctctctgtcatctatacaatagtgatacaaat 505
Query: 304 aaaatgctaggaaaaatgagcttgaaacacaaggctgtaaagcatctgctacatttaagg 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaaatgctaggtaaaatgagcttgaaacacaaggctgtaaagcatctgctacatttaagg 565
Query: 364 agatttgataaagtcaagttatcacagtaaacaagcaagcaaacagaccacccctactat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agatttgataaagtcaagttatcacagtaaacaagcaagcaaacagaccacccctactat 625
Query: 424 acaggaatagaacttgtttttctatgtcttgctttgctggtcactgttgaggaaggataa 483
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 626 acaggaatagaacttgtttttctatgtcttactttgctggtcactgttgaggaaggataa 685
Query: 484 acaatataaatcttaattagatggtagtctgctcctgactggaaattcctgtttttctgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 acaatataaatcttaattagatggtagtctgctcctgactggaaattcctgtttttctgg 745
Query: 544 tctttggtaccatggctggaagagcattagggatgatttgttcctctgacttctgcatgc 603
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 746 tctttggtaccatggctggaagagcattagggctgatttgttcctctgacttctgcatgc 805
Query: 604 cttagaccttggttagaacgcagaagcctctactcccctggcagctgccagctccttttt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cttagaccttggttagaacgcagaagcctctactcccctggcagctgccagctccttttt 865
Query: 664 acaatgcagatgagatgtatgtagagag 691
||||||||||||||||||||||||||||
Sbjct: 866 acaatgcagatgagatgtatgtagagag 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1093
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1083
Effective search space: 737523
Effective search space used: 737523
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_a05.g1 MSMg01no316_a05.g1 CHROMAT_FILE:
MSMg01no316_a05.g1 PHD_FILE: MSMg01no316_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:39 2005
(661 letters)
>mm_chr3_144592892_144593951
Length = 1060
Score = 1201 bits (621), Expect = 0.0
Identities = 652/663 (98%), Gaps = 4/663 (0%)
Strand = Plus / Minus
Query: 1 agaaaatggatatttgataagactatttttagagacctaaaagaattctcagcatagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agaaaatggatatttgataagactatttttagagacctaaaagaattctcagcatagtct 673
Query: 61 tctattgaatattacaagtacaaattcaatcctttgccaacatgtctatagtttagtggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tctattgaatattacaagtacaaattcaatcctttgccaacatgtctatagtttagtggc 613
Query: 121 ttttgacacttagccttttacaaagtcttctctcatcagaagatgacttgctctcctcta 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 612 ttttgacacttagccttttacaaagtcttctctcatcagaagatcacttgctctcctcta 553
Query: 181 cttatacaatgattttggaaaactcttataattgatgggttgatattctccattatcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cttatacaatgattttggaaaactcttataattgatgggttgatattctccattatcaag 493
Query: 241 tttcttttgtattttatgttcaggatcctttgggatttaaaacctgaccacttctgcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttcttttgtattttatgttcaggatcctttgggatttaaaacctgaccacttctgcaaa 433
Query: 301 cactgatatttcagctttttaattttttttaagtctaaaacattattggaattctgggga 360
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 432 cactgatatttcaggtttttaattttttt-aagtctaaaacattattggaattctgggga 374
Query: 361 ggaacttagaatgaatacaataggactttggttagaaaactttgagaaacccttattagg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 ggaacttagaatgaatacaataggactttggttagaaaactttgagaaacccttattaag 314
Query: 421 cacccagtatcagtgaagatgaaagttatctacaatgtctctgatagctctccatggcct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 313 cacccagtatcagtgaagatgaaagttatctacaatgtctctgatagctctccatgacct 254
Query: 481 acaaacacaccactatctaagaaagccagttgagtcatggggactctcaaggaaatgcag 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acaaacacacccctatctaagaaagccagttgagtcatggggactctcaaggaaatgcag 194
Query: 541 tcccttggagttatacaatacacaacctacacagttgtaca--gcgaagcctactggtcc 598
|||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 193 tcccttggagttatacaatatacaacctacacagttgtacacagc-aagcctactggtcc 135
Query: 599 aattaataactcagtttgaaccactaccactctgttctcatatgttcagagagtactctc 658
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 134 aattaataactcagtttgaaccactaccactctgttctcatatgtacagagagtactctc 75
Query: 659 ttc 661
|||
Sbjct: 74 ttc 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
