BAC Information

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BAC

Clone NameMSMg01-316D09
Chromosome3 (Build37)
Map Location 102,926,718 - 102,927,076
singlet/doubletsinglet
Overlap genenone
Upstream geneCasq2, Vangl1, EG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1
Downstream geneDennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316D09.T7 (MSMg01no316_d09.b1)MSMg01-316D09.TJ (MSMg01no316_d09.g1)
ACCAG436626AG436627
length729730
length of high quality
(start - end)
240 (126 - 365)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no316_d09.b1 PHD_FILE: MSMg01no316_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:54 2005CHROMAT_FILE: MSMg01no316_d09.g1 PHD_FILE: MSMg01no316_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGTTCTTTGCTTCCACAAGGAAGAATTCCTGATGAAATCTCCAA
GTCATGGCACATTAAACTGTGTCGCTTTCATCTTTGTTTTTGTTTTAAAT
TGCAGCCAAGCGTCATACAGCCCAGGCTGACCACAAACTTGCAATATTAC
TCAGGACAACCTTGACCTCTGATCCCTCTGCTTCCATCTCCCAATCTCTG
GAATTATAGGCTTGCAACACTGTTCCCTGCTGGACCAACTTGTTTGTTTT
TCTGTTTTGGCTTTTTTGTGTTTATTTTTGATTGTTTGATTTCTGAGACA
GGGTTTCACCATTTAGCCCTGGCTGTCCTGGAACTTACTCTGTAGACCAA
GCTGACTTTGAACTCCCAGAGATCTGACCACCTGTCTCAAGAGCAATGGG
ATTAAAGGTGTGTGCCGACACCACCAGGCCCAATTTCTTAATAGGAGGAC
CTATGTCACAAAATGTTTAGCCTATGCACCAAATAATAAAGTCACAGCAC
TGTTGCAGGATATTTGATCACACTGAGACCCCTGAAATTGTGTTATTTGC
TGAGAAAAAAACTGTTTCTAGTGGTGGTGTGGATCAACTTTAGCACACAC
CTTTCGTCGCTCTGGCTGGAATACATATGCACTCACACAACGAAGTGAGT
TTGTAGAAGAAAACACCCATGTTTGATAN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATTAAATCAGAGTTCATAACAG
CCAAAACTGATATTCAAAGGGAGACAGGGCCAGTGTGGTTGCTAAAGGCA
ACTGACCACAGAAGACCATGAGACAAAATACACATGTTGGTAGAGTGAGG
AGTTATATAAATGAACACTTTTATGCCAGGCAGTGATGGCACATGCCTTT
AATCCCAGCACTTGGGAGACAGATGCAGGCAGATTTCTGAGTTTAAGGCC
AGCTAGGGCTATACAGAGAAACCCTGTCTCAAAAAAACGAAAAAACAAAA
CAAACAAACAAACAAAAAAAACCACACATTTGCCAAAAACTAGTTGATAC
TTTAAAAATAATAATAATTATATGGCTGGGCGGTGGTGGTGCTCGTCTTT
AATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCTAGGCC
AGCCTAGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAA
CCCTGTCTCGGAAAAAAAAAAAGAATAATCATATGAAGAATAGAGGTAGT
ATTCTCTGAAGTGTTTGTGCAGTTTTACTTTTAATATGAATGAGAAAAAC
TACCTTTTTTTGAGATGGGAGTCTCATTTAGGCAGGCTCCAAATTCCTGT
GTTCAGTAACCTGGCCTCAGTTGACTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_d09.g1 MSMg01no316_d09.g1 CHROMAT_FILE:
MSMg01no316_d09.g1 PHD_FILE: MSMg01no316_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:54 2005
         (654 letters)



>mm_chr3_102926023_102927076
          Length = 1054

 Score =  679 bits (351), Expect = 0.0
 Identities = 357/359 (99%)
 Strand = Plus / Minus

                                                                        
Query: 296  ccacacatttgccaaaaactagttgatactttaaaaataataataattatatggctgggc 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1054 ccacacatttgccaaaaactagttgatactttaaaaataataataattatatggctggga 995

                                                                        
Query: 356  ggtggtggtgctcgtctttaatcccagcacttgggaggcagaggcaggcagatttctgag 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  ggtggtggtgctcgtctttaatcccagcacttgggaggcagaggcaggcagatttctgag 935

                                                                        
Query: 416  ttctaggccagcctagtctacagagtgagttccaggacagccagggctacacagagaaac 475
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  ttctaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaac 875

                                                                        
Query: 476  cctgtctcggaaaaaaaaaaagaataatcatatgaagaatagaggtagtattctctgaag 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  cctgtctcggaaaaaaaaaaagaataatcatatgaagaatagaggtagtattctctgaag 815

                                                                        
Query: 536  tgtttgtgcagttttacttttaatatgaatgagaaaaactacctttttttgagatgggag 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  tgtttgtgcagttttacttttaatatgaatgagaaaaactacctttttttgagatgggag 755

                                                                       
Query: 596  tctcatttaggcaggctccaaattcctgtgttcagtaacctggcctcagttgactgggt 654
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  tctcatttaggcaggctccaaattcctgtgttcagtaacctggcctcagttgactgggt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)