Query= MSMg01no316_f21.b1 MSMg01no316_f21.b1 CHROMAT_FILE:
MSMg01no316_f21.b1 PHD_FILE: MSMg01no316_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:06 2005
(326 letters)
>mm_chr3_95396645_95397370
Length = 726
Score = 572 bits (296), Expect = e-168
Identities = 318/328 (96%), Gaps = 7/328 (2%)
Strand = Plus / Plus
Query: 1 gagagaccttgtcaaaacaaggagcagggggaacaataggttttta---tttcccttgtt 57
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 201 gagagaccttgtcaaaacaaggagcagggggaacaataggtttttagttttt---ttgtt 257
Query: 58 tttcattttcttctgtggatcttgtaacaattttttaagttttttttttatttgtatgta 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttcattttcttctgtggatcttgtaacaattttttaagttttttttttatttgtatgta 317
Query: 118 cgtatctgtagagatggctcaaccattaagaacactggctgctcttccagagatcctgag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cgtatctgtagagatggctcaaccattaagaacactggctgctcttccagagatcctgag 377
Query: 178 ttcaatttccagcagccagatggtggctcacaaccatttgtaatgtaatctgttacccta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcaatttccagcagccagatggtggctcacaaccatttgtaatgtaatctgttacccta 437
Query: 238 ttctggtatgcatctatttaggcagatagagcactcatatagataaaataaatacatctt 297
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttctggtatgcagctatacaggcagatagagcactcatatagataaaataaatacatctt 497
Query: 298 ttttggggggggaggattggg-tttttt 324
||||||||||||||||||||| ||||||
Sbjct: 498 ttttggggggggaggattggggtttttt 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_f21.g1 MSMg01no316_f21.g1 CHROMAT_FILE:
MSMg01no316_f21.g1 PHD_FILE: MSMg01no316_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:06 2005
(247 letters)
>mm_chr3_95565500_95566145
Length = 646
Score = 447 bits (231), Expect = e-130
Identities = 243/247 (98%), Gaps = 1/247 (0%)
Strand = Plus / Minus
Query: 1 aagttcacacaggactctacagaggaaagaaaaggagggctttggatccctcagtggggt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 aagttcacacaggactctacagaggaaagaaaaggagggctttggattcctcagtggggt 387
Query: 61 gggtagggaatggagggaagggtggcctgtggttgaagacaatccttttgtcttggagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gggtagggaatggagggaagggtggcctgtggttgaagacaatccttttgtcttggagca 327
Query: 121 aaccacttttttttttttcctgaagaaaggctgtccagcaaagcccgggagctgtgatct 180
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 326 aaccac-tttttttttttcctgaagaaaggctgtccagcagagcccgggagctgtgatct 268
Query: 181 gtgtgaggtacagcaagaatcctcagaattcacatccgttttgagccagttctttcctct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctgtgaggtacagcaagaatcctcagaattcacatccgttttgagccagttctttcctct 208
Query: 241 caagcct 247
|||||||
Sbjct: 207 caagcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
