BAC Information

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BAC

Clone NameMSMg01-316L08
Chromosome3 (Build37)
Map Location 96,786,490 - 96,786,735
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8
Downstream gene9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316L08.T7 (MSMg01no316_l08.b1)MSMg01-316L08.TJ (MSMg01no316_l08.g1)
ACCAG436985AG436986
length750760
length of high quality
(start - end)
627 (71 - 697)249 (74 - 322)
definitionCHROMAT_FILE: MSMg01no316_l08.b1 PHD_FILE: MSMg01no316_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:32 2005CHROMAT_FILE: MSMg01no316_l08.g1 PHD_FILE: MSMg01no316_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATT
CACTGACGCGTGTCGAAAGGCCAGCTGGGATGCCCCCAAAGTTTGGGGAC
TAAGACTCTATCGATCCACACCCGCCGACCCGGTGACCCGGTTCTCTTTG
ACCCGCCAGGTCCTCAATGTAGGACCCCGCGTCCCCATTGGGCCTAATCC
CGTGATCACTGACCAGCTACCCCCATCCCAACCCGTGCAGATCATGCTCC
CCAGGCCTCCTCATCCTCCTCCTTCAGGCACGGTCTCTATGGTACCTGGG
GCTCCCCCGCCTTCTCAACTTTCTGGGACGGGAGACAGGCTGCTAAATCT
GGTAGAAGGAGCCTACCAAGCACTCAACCTCACCAGTCCTGACAAAACCC
AAGAGTGCTGGTTGCGCCCGGTATCGGGACCCCCCTACTACGAAGGGGTT
GCCGTCCTAGGTACCTACTCCAACCATACCTCTGCCCCAGCTAACTGCTC
CGTGGCCTCCCAACACAAGCTGACCCTGTCCGAAGTGACCGGACAGGGAC
TCTGCGTAGGAGCAGTTCCCAAAACCCATCAGGCCCTGTGTAATACCACC
CAGAAGACGAGCGACGGGTCCTACTATCTGGCTGCTCCCGCCGGGACCAT
CTGGGCTTGCAACACCGGGCTCACTCCCTGCCTATCTACTACTGTACTCA
ACCTCACCACCGATTACTGTGTCCTGGTTGAGCTCTGGCCAAAGGTGACN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTGCCTTGGGCTTTGACGCTATGGG
GAATGACATTACCCAAAGGTTGGCCACTTGCACGGGTCAACCAGACCGAA
TCTCAATGTCAAATAAGTAAATTGTCATGACTCCCTCACAAGTGTCTCCT
AGTTGGGATGTTTATTCAAAGGCCCAGTCCTTGTGTCTGAGATGGTGGGA
AGGTGGGAGAAGGGAATGGGAATTAACCAGCTTTGTGCCTTGGCTGAAGA
GCAGAGACAGAAGGGGCCCCAGCATTATACTAGAATGAACAAAGTAGTCA
TCTGGCAGCCTGACCCGTTTCTCAGCTTTACCATCTGGTGACTTCTATTT
CTGGAGGATTTTTTTTCCCCCCCGTTCCCATCACTTGATGGCACTGACCA
TTCTCCAGGCATCCCAGCTCAGTGACATTTGAGTGTGTGTCACAAGATCT
GTGGTTCTGAGGCAACAGCAGTACACAAGACCAAGGGGCAAAATGATCCG
GGCATATCCGCAAAGAATTATCAGCCCATGATGGATGGTGACTGAGCATC
GTCAGCCACGGTCTTCTGTCAACCCTTAGTGGTCACTGGCAAAAAACGCA
TGTCTGCAATGACTGTGCCATCCCCAGATATCCTGATGTCTAATGACTAC
TGGTGTTTTGATGATGAACTTGCTTTCTTTAATTATCATTTCATCTCTCT
AAAAGTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_l08.g1 MSMg01no316_l08.g1 CHROMAT_FILE:
MSMg01no316_l08.g1 PHD_FILE: MSMg01no316_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:32 2005
         (249 letters)



>mm_chr3_96786290_96786937
          Length = 648

 Score =  431 bits (223), Expect = e-125
 Identities = 242/249 (97%), Gaps = 3/249 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgccttgggctttgacgctatggggaatgacattacccaaaggttggccacttgcac 60
           ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct: 201 tcctgccttgggctttgacgccatggggaatgacattacccaaaggttgg-caattgcac 259

                                                                       
Query: 61  gggtcaaccagaccgaatctcaatgtcaaataagtaaattgtcatgactccctcacaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 260 gggtcaaccagaccgaatctcaatgtcaaataagtaaattgtcatgactccctcacaaga 319

                                                                       
Query: 121 gtctcctagttgggatgtttattcaaaggcccagtccttgtgtctgagatggtgggaagg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtctcctagttgagatgtttattcaaaggcccagtccttgtgtctgagatggtgggaagg 379

                                                                       
Query: 181 tgggagaagggaatgggaattaaccagctttgtgccttggctgaagagcagagacagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgggagaagggaatgggaattaaccagctttgtgccttggctgaagagcagagacagaag 439

                    
Query: 241 gggccccag 249
           ||  |||||
Sbjct: 440 gg--cccag 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)