Query= MSMg01no316_m11.b1 MSMg01no316_m11.b1 CHROMAT_FILE:
MSMg01no316_m11.b1 PHD_FILE: MSMg01no316_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:37 2005
(669 letters)
>mm_chr3_43356363_43357431
Length = 1069
Score = 766 bits (396), Expect = 0.0
Identities = 396/396 (100%)
Strand = Plus / Minus
Query: 274 tccttcattttatcatattttaattcactatgtttgattattatcttttataagcttgtt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 tccttcattttatcatattttaattcactatgtttgattattatcttttataagcttgtt 1010
Query: 334 tttatacaaggaaagagagaaaagctgtggatctgaaggagaagaggggagagtggacca 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 tttatacaaggaaagagagaaaagctgtggatctgaaggagaagaggggagagtggacca 950
Query: 394 cagaggactagagggagtggaaattataagaaagatatattgtaaaagaatctatttcca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 cagaggactagagggagtggaaattataagaaagatatattgtaaaagaatctatttcca 890
Query: 454 ataatagaaaaatatagaaagacagaacacaactatttcatatgtttcagcgtaagtagt 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 ataatagaaaaatatagaaagacagaacacaactatttcatatgtttcagcgtaagtagt 830
Query: 514 ttaaatgacagaataatcaatcagctcatgtgttttctaaaaattatttttagttttatg 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ttaaatgacagaataatcaatcagctcatgtgttttctaaaaattatttttagttttatg 770
Query: 574 atacatctctttgtagaagttctgatagtataaaatatatttgacattttaatctataga 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 atacatctctttgtagaagttctgatagtataaaatatatttgacattttaatctataga 710
Query: 634 ttattttatttctttatttttcttgttaaattatgg 669
||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttattttatttctttatttttcttgttaaattatgg 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_m11.g1 MSMg01no316_m11.g1 CHROMAT_FILE:
MSMg01no316_m11.g1 PHD_FILE: MSMg01no316_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:37 2005
(605 letters)
>mm_chr3_43185758_43186762
Length = 1005
Score = 1027 bits (531), Expect = 0.0
Identities = 575/601 (95%), Gaps = 19/601 (3%)
Strand = Plus / Plus
Query: 1 cttataatttatagtgatgaattatggaagaaatgggaggacgacctatatgattggttc 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 218 cttataatttatagtgatgaattatggaagaaatgggaggacgacttatatgattggttc 277
Query: 61 agtttgggaggggaatggctaagtgagatgaatgaggaatattgggaagacagccaaaat 120
|||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 278 agtttgggaggg-----------------gaatgaggaatattgggaagacagccaaaat 320
Query: 121 taagggcctttgagtggtagtatggaaacgtaacagagtaggaacttcttattgagttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagggcctttgagtggtagtatggaaacgtaacagagtaggaacttcttattgagttgt 380
Query: 181 tggccaaagaagtatcatgggaaccgctaaagaacccaggctgatgcttggatccaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggccaaagaagtatcatgggaaccgctaaagaacccaggctgatgcttggatccaaatg 440
Query: 241 gcatgactagtcccactactccaactaaaatggctcccttctgcatgctgggctctctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gcatgactagtcccactactccaactaaaatggctcccttctgcatgctggactctctgg 500
Query: 301 tgatcaactattcccacagtcctgtttcaccttcactacacccctttcagggtatgactt 360
|||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct: 501 tgatcaactattcccacagtcctgcttcaccttcactagagccctttcagggtatgactt 560
Query: 361 aggaaactctgaagcatattataaaatttatatttatatgctatccaggatccacatgtc 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 aggaaactctgaagcatgttataaaatttatatttatatgctatccaggatccacatggc 620
Query: 421 tttatagtatatgccatgtgagcaacttgtatgcattttcacatttactttcagcctcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttatagtatatgccatgtgagcaacttgtatgcattttcacatttactttcagcctcaa 680
Query: 481 gacataggcttgccattcatagactaagggttgtacagtacaggtttctttgcagtggtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacataggcttgccattcatagactaagggttgtacagtacaggtttctttgcagtggtg 740
Query: 541 ctgatttcattagtcatagctgattctactgtctcagcagaacagcatacaggccttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 ctgatttcattagtcatagctgattctactgtctcagcagaacagcatacagg--ttttt 798
Query: 601 t 601
|
Sbjct: 799 t 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
