BAC Information

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BAC

Clone NameMSMg01-316O12
Chromosome3 (Build37)
Map Location 152,475,530 - 152,634,037
singlet/doubletdoublet
Overlap geneSt6galnac5
Upstream genePtgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1
Downstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316O12.T7 (MSMg01no316_o12.b1)MSMg01-316O12.TJ (MSMg01no316_o12.g1)
ACCAG437124AG437125
length735742
length of high quality
(start - end)
341 (67 - 407)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no316_o12.b1 PHD_FILE: MSMg01no316_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:47 2005CHROMAT_FILE: MSMg01no316_o12.g1 PHD_FILE: MSMg01no316_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,633,699 - 152,634,037)(152,475,530 - 152,475,753)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGAATTCT
GCTGTTTTTCACACAGCATGTACTTATGCAAACAAGACAGTATCCTGGTC
ACATGATCCTATGGGCCACCCCTGTGTATGGACTTCATTGCTGATGGAAA
TGCTACTGTACTATGCTTGGCTGTATTACCAATATAGCCTAGCAAGTGCC
AAGCTATTCTTTGTAGCTGTGCACATCTTTTGTCACATAGTATTTCCATT
GGTATTTCTTCACCTGTCTCCCAGTCTTGTCCGCCCGACTTCTTAAACAT
AATTTAGTCATATTGTGTCTTGTAAGTATCAAATCTCAGTAAATCCTTGT
TGAGTCTAGCTGTGATCATGCTGCATTTGATTATGTTATATTTGAATAAA
CCTGGTTAATCCCCCCCTTAATCATAAGAATGGACAAAAATGATAAATGG
GGGAAGAAAGACTTTACATACCCAGGCTTAATTTCTGAATCTTTTGAAAA
CACAGACCTTCCAAATGGTGGACCACATGTTGAAGCAAGAGGATGTGTTT
AGGCTCTTTGTAGCGAGCTACGTAACTTCTATGCTTAAGTTAGCCTGCAC
AGATGTTAAACAACATGCACTCGTTCCTTAGTCTGCTATATGCATGTACC
TACCTTTGTACCTAACATTGTGTGTTGTGATCAGGAGGCTTCAGACTATA
GATTAAGCATGTCCCCCAACTCTGATATTCACTTG
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATCCCAGAAGACCCACTTTTGAAA
ACAGGAGCCTGAGAAAAAAAGAACCTCCCACCGGGTATATGAGTGGGCAA
ATGCACAAGACTGTTCGCTGTGCATCTTAAGCAGAGAGAAGCTCATGGCT
GTCACAATAAAACAGTAAAATGACTGAGAAGAACACAGCAGCGGGAGGGA
GGTGATCAGGGGCTGCTTTGACACTTTCACAATTTCTTCAAGGTGTTAAA
GTATTAGTCACAGGAGATTAGAATTCAGAAATAAACACTGCAGAATGACC
AAAACATTCCTAGGAAAAGATGGACAAAGATGTAGTACCTCTGTGTTAGT
TTCTTTTCTGTTGTATGACCCCCCCATGGCGAGAGAGACTGGGAGGCATG
TGACAGGTGCCTGCAACAGAGACTGGAGAGCACTTCCCTACAGGAAGCCA
GGAGTGATCCTGAAGCGGTCGGACCAAGGCTCAAGACTGCCCTTAATGAT
GTACTTCCTCTAGCAAGACTCCACCTAAAGACTCCATAACTTTTCTAACA
GCATCTCTAACTGGGGCCAAGTATTTCATACATGAGCCTTTGGGGGACAT
TTCTCATTCAAACCATTATATAGGATACTTCCAACCCGCATTTATGAACT
AAAAGACTCCATATCAACAGGAATGAGTTGCCCCCCACCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_o12.b1 MSMg01no316_o12.b1 CHROMAT_FILE:
MSMg01no316_o12.b1 PHD_FILE: MSMg01no316_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:47 2005
         (341 letters)



>mm_chr3_152633499_152634239
          Length = 741

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtacttatgcaaacaagacagtatcctggtcacatgatcctatgggccacccctgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 539 catgtacttatgcaaacaagacagtatcctggtcacatgatcctatgggccagccctgtg 480

                                                                       
Query: 61  tatggacttcattgctgatggaaatgctactgtactatgcttggctgtattaccaatata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 479 tatggacttcattgctgatggaaatgctactgtactatgcttggctgtattagcaatata 420

                                                                       
Query: 121 gcctagcaagtgccaagctattctttgtagctgtgcacatcttttgtcacatagtatttc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 419 gcctagcaagtgccaagctattctttgtagctgtgcacattttttgtcacatagtatttc 360

                                                                       
Query: 181 cattggtatttcttcacctgtctcccagtcttgtccgcccgacttcttaaacataattta 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 359 cattggtatttcttcacctgtctcccagtcttgtctgcccgacttcttaaacataattta 300

                                                                       
Query: 241 gtcatattgtgtcttgtaagtatcaaatctcagtaaatccttgttgagtctagctgtgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtcatattgtgtcttgtaagtatcaaatctcagtaaatccttgttgagtctagctgtgat 240

                                                  
Query: 301 catgctgcatttgattatgttatatttgaataaacctgg 339
           ||||| |||||||||||||||||||||||||||||||||
Sbjct: 239 catgccgcatttgattatgttatatttgaataaacctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no316_o12.g1 MSMg01no316_o12.g1 CHROMAT_FILE:
MSMg01no316_o12.g1 PHD_FILE: MSMg01no316_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:47 2005
         (245 letters)



>mm_chr3_152475330_152475974
          Length = 645

 Score =  379 bits (196), Expect = e-110
 Identities = 217/224 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcccagaagacccacttttgaaaacaggagcctgagaaaaaaagaacctcccaccggg 60
           ||||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||
Sbjct: 201 catcccagaagacccacctttgaaaccaggagactgagaaaaaaagaagctcccaccggg 260

                                                                       
Query: 61  tatatgagtgggcaaatgcacaagactgttcgctgtgcatcttaagcagagagaagctca 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tatatgagtgggcaaatgcacaagactgctcgctgtgcatcttaagcagagagaagctca 320

                                                                       
Query: 121 tggctgtcacaataaaacagtaaaatgactgagaagaacacagcagcgggagggaggtga 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggctgtcacaaaaaaacagtaaaatgactgagaagaacacagcagcgggagggaggtga 380

                                                       
Query: 181 tcaggggctgctttgacactttcacaatttcttcaaggtgttaa 224
           |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tcaggggctgctctgacactttcacaatttcttcaaggtgttaa 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)