Query= MSMg01no317_b08.b1 MSMg01no317_b08.b1 CHROMAT_FILE:
MSMg01no317_b08.b1 PHD_FILE: MSMg01no317_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:01 2005
(693 letters)
>mm_chr3_79851029_79852121
Length = 1093
Score = 1208 bits (625), Expect = 0.0
Identities = 674/691 (97%), Gaps = 6/691 (0%)
Strand = Plus / Plus
Query: 5 gaattctttttttaaaaaacaggcatctataatgatctgaacaaacaaggcaaattcaca 64
||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttttttt--aaaataggcatctacaatgatctgaacaaacaaggcaaattcaca 264
Query: 65 agggctgtgtcaggagcatacatagctctgttgagaaagacaccaccttttaaagcagga 124
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcctgtgtcaggagcatgcatagctctgttgagaaagacaccaccttttaaagcagga 324
Query: 125 cactcaacctgttaaagattgaggagtaagagactctaagtccccttcatactgggtgtc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactcaacctgttaaagattgaggagtaagagactctaagtccccttcatactgggtgtc 384
Query: 185 cctgtgacttcatccaatctcctgcctctgtagttctgaattgtttctgactttcttgtg 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgtgacgtcatccaatctcctgcctctgtagttctgaattgtttctgactttcttgtg 444
Query: 245 gtcagctttgtttctttcttaaatgccaagttcaggcctatccccagacattgacgcaag 304
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 gtcagctttgtttctttcttaaatgccaagttcaggcctatcctcagacattgacgcaag 504
Query: 305 agtattcattatttattttcaacagctttaaaaattggaccaggataataaactctt-at 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 505 agtattcattatttattttcaacagctttaaaaattggaccaggataataaac-ctttac 563
Query: 364 ttagtattgcttgcacttgtttggtgtctttaatcaaatcttcacaactgaggtttctgt 423
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttagtattgcttgtagttgtttggtgtctttaatcaaatcttcacaactgaggtttctgt 623
Query: 424 ttggtattatcacatgacaagattgacttcaactgacattgtttcgggttccaactc-gg 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 624 ttggtattatcacatgacaagattgacttcaactgacattgtttcgggttccaa-tccgg 682
Query: 483 cagaataggttttgtgtgtcattttagtctaacgatcccttctaattggaccactgggaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cagaataggttttgtgtgtcattttagtctaacgatcccttctaattggaccactgggaa 742
Query: 543 aatctttgtggccacaagggaaaaagaatatacttattggtcaggtttgatctatacatc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aatctttgtggccacaagggaaaaagaatatacttattggtcaggtttgatctatacatc 802
Query: 603 cacattgatactgattgttgtggcctgagaaactcaatgaattgacgggataatcttgac 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cacattgatactgattgttgtggcctgagaaactcaatgaattgacgggataatcttgat 862
Query: 663 ttacaggcttttctctaacaatatttgaaag 693
|||||||||||||||||||||| ||||||||
Sbjct: 863 ttacaggcttttctctaacaatgtttgaaag 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_b08.g1 MSMg01no317_b08.g1 CHROMAT_FILE:
MSMg01no317_b08.g1 PHD_FILE: MSMg01no317_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:01 2005
(666 letters)
>mm_chr3_79906732_79907797
Length = 1066
Score = 1280 bits (662), Expect = 0.0
Identities = 665/666 (99%)
Strand = Plus / Minus
Query: 1 tcttgagacactgattggattgcccttgagtctgccacccattccatatagatctccagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tcttgagacactgattggattgcccttgagtctgccacccattccatatagatctccagt 807
Query: 61 gctttccaaccaggtggaaagcaagttacctgtgttaatagtgtgtaacaatattctgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gctttccaaccaggtggaaagcaagttacctgtgttaatagtgtgtaacaatattctgca 747
Query: 121 cagttgaaaaatgctctatatagtgatacggttcataaatatagtgaaatatactgttca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 746 cagttgaaaaatgctctatatagtgatacggttcataaatatagtgaaatatacggttca 687
Query: 181 taaatatagtgaaaatattaacaacatgttaataaacaaatgtgttgtaagtaatacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taaatatagtgaaaatattaacaacatgttaataaacaaatgtgttgtaagtaatacaat 627
Query: 241 tcaattcataaagcattactgttacatactatttgtagcctgattccttatctgtcctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcaattcataaagcattactgttacatactatttgtagcctgattccttatctgtcctgg 567
Query: 301 attttcggcttgttttggaacatagtggcaaaaatatcttttaaaatcctaaagcatgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attttcggcttgttttggaacatagtggcaaaaatatcttttaaaatcctaaagcatgtt 507
Query: 361 catacatttctccagttttaactgaaagatgaaagtgtaagcacctttgttcctttttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 catacatttctccagttttaactgaaagatgaaagtgtaagcacctttgttcctttttac 447
Query: 421 tggttttagatatttttctaagtttaagggctaccaaaaggattatgaaatcagaggaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggttttagatatttttctaagtttaagggctaccaaaaggattatgaaatcagaggaca 387
Query: 481 gaatagacaaagcttctacaaagagtgggaaactagaatggagaaatatgcctcatgttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaatagacaaagcttctacaaagagtgggaaactagaatggagaaatatgcctcatgttg 327
Query: 541 tggaggaagacactgggagactttctaaggaaattaacaacacatggttttgtatgccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggaggaagacactgggagactttctaaggaaattaacaacacatggttttgtatgccca 267
Query: 601 ttttatgccgttatcatagaacatggcagactgggcaatttatgtgcaccttaaggtaac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttttatgccgttatcatagaacatggcagactgggcaatttatgtgcaccttaaggtaac 207
Query: 661 atggag 666
||||||
Sbjct: 206 atggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
