BAC Information

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BAC

Clone NameMSMg01-317B10
Chromosome3 (Build37)
Map Location 93,149,828 - 93,150,130
singlet/doubletsinglet
Overlap genenone
Upstream geneSprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr
Downstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317B10.T7 (MSMg01no317_b10.b1)MSMg01-317B10.TJ (MSMg01no317_b10.g1)
ACCAG437257AG437258
length744747
length of high quality
(start - end)
318 (49 - 366)285 (79 - 363)
definitionCHROMAT_FILE: MSMg01no317_b10.b1 PHD_FILE: MSMg01no317_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:01 2005CHROMAT_FILE: MSMg01no317_b10.g1 PHD_FILE: MSMg01no317_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGACAGCTCGGGCTATACAGAGAAACCCTGTCTCAAAGAA
CCAAAAAAAAAAAAAAACCCACCAAAAAAAAAATCTATATNTTTAGAAAA
AGATGGATTTTTTAGTAGTATAAGTATTAACTTTTTGGGATACAATTACA
TGGTATTTTAGATGGCATGTGTATAAACACACATGCTTTAGATAGTGTCT
TAGTCAGGGTTTCTATTCCTGCACAAACAGTCATTACCAAGAATCAAGTT
GGGGAGGAAAGGGTTTATTTGGCTTACACTTCCATACTGCTGTTCATCAC
CAAGGAAGTCAGGATTTTTTTTCAAGCCCCCCCCCCCCCAGGAGCTGATG
CAGAGGCCATGGAGAGATGTTCCCCACAGACAAGATCAACCTGCTCTCTT
ATAGAACCCAAGACTACCAGCCCAGAGATGGCACCACCCACAAGGGGCCT
TTCCCCCTTGATCACTAATTGAGAAAATGCCTTATAGTTGGATCTCATGG
AGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGT
CAAGTTGACACAAAACTAGCCAGTACAGATAGCATGAAGCTTTAGATGAT
ATGATGCCTACCTAGGAACAGCCCGTAATTATCGATGAGGTGCCAAGTAT
CATCTGTTACCAACCCTGAGCCTTATCTGTGTTCAATCTCAAAG
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAATCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAACCACT
CTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGG
AGGATCCAGCAATACTTCTCCTGGGCCCACCATCCCCAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTACGCCCATAGCAACCTTATTTATAA
TAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATCGATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATA
CAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_b10.b1 MSMg01no317_b10.b1 CHROMAT_FILE:
MSMg01no317_b10.b1 PHD_FILE: MSMg01no317_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:01 2005
         (318 letters)



>mm_chr3_93149689_93150404
          Length = 716

 Score =  528 bits (273), Expect = e-154
 Identities = 298/309 (96%), Gaps = 6/309 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttccaggacagctcgggctatacagagaaaccctgtctcaaagaaccaaaaaaaaaaaaa 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttccaggacagctagggctatacagagaaaccctgtctcaaagaaccaaaaaaaaaaaaa 383

                                                                       
Query: 68  aacccaccaaaaaaaaaatctatatntttagaaaaagatggattttttagtagtataagt 127
                |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 382 -----accaaaaaaaaaatctatat-tttagaaaaaggtggattttttagtagtataagt 329

                                                                       
Query: 128 attaactttttgggatacaattacatggtattttagatggcatgtgtataaacacacatg 187
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attaacttttttggatacaattacatggtattttagatggcatgtgtataaacacacatg 269

                                                                       
Query: 188 ctttagatagtgtcttagtcagggtttctattcctgcacaaacagtcattaccaagaatc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 268 ctttagatagtgtcttagtcagggtttctattcctgcacaaacagtcatgaccaagaagc 209

                                                                       
Query: 248 aagttggggaggaaagggtttatttggcttacacttccatactgctgttcatcaccaagg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aagttggggaggaaagggtttatttggcttacacttccatactgctgttcatcaccaagg 149

                    
Query: 308 aagtcagga 316
           |||||||||
Sbjct: 148 aagtcagga 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 716
Length adjustment: 9
Effective length of query: 309
Effective length of database: 707
Effective search space:   218463
Effective search space used:   218463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)