NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGC
GGAATTCTGCTATTATCCGCTCCTTTTACTTTTGAAAGTCCTGAGTCTTT
ATATTCAATGCCTTTTACTGTAAAAGGTAGCTTCTATGAAGAGAACCGAG
GGCTTTGAATTAACACAAACTACAGATAGCAAGGCAGCCATGCCTATTCT
AAAACAGGCTATAATACCTATTTTATCTCTCTTTCAACCCAGTCCTTACA
GGGAGAGATTAATGTGAAATGATATCAGAAGAATCTTATCAAAAATAAAA
TGTAGAAGATTCAAGTTATGTTTATAGACTCATCTCATCCAGTGAGGACA
TTAAGAATTAGAGAAGTAGAAAACAGAAAGGAAGGATTTGAAGTTGTGCA
GTGTTTCAAACACTCTGTCAAGCGACTTTCATGAGTAGCAAGGAACAGGA
GCAGTGTTGTATTTTAGAGGAATCCAAAAATCAAGGGATGTTTATGAATC
AGTAATACAGTTGAAAAATTTTGAGAAACAAAAGCTGATGCTGTCATTGC
TGTGTTGCAGCCTGTACAGCGTGGTGTCCGGAACCAAGCAAAGCGATGGC
AACAGAATACTTGAACTTTTTTTTAATTGATCTCCTGCTGTACAAGTCTC
TCCTTGAAATTTAACAAGATGGTCAGCTTTGGAAAGGTAGGGAAATAACT
AATACTTGAGAGATTANATATCTTGAATAAACATAT

NCCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATTTACAAATTTAAAAAAA
AGAAAGAAAAGAAAGGAAAAGAAAGGAAGGAAGGAAGAAAGGAAGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAAAGGGAA
GGGAGGGGAGGGGAGGCTNCTTTTTTTCTTCCTTCCCCCTCTCCCCTTTT
CCCCCCTTTCTTTCCTCCCTTCCTTTTTCTCCCTTTTTTTTTTCTTTTTC
CCCCCCCTCCTCTTTCCCCCCCCCCTTTTTTTTTTTTCTTTCTTTTTTTT
TTTCCCCCTTCTTTCCTCTTTTTTTTTCCCCTCTCCTCCCCCCTTTTCTT
TTTCTTTCTCTCCTCTTTTTCCTTTTTTTTTTTTTCCCCCCCCCCCCCCN
TTTTTNTTTTTTTCTTTTCCCCCTTGGTTTTCTTCTTTTCTTTTCTTTCC
CCTCTTTTTCTTCCGCCTTCCCCCCTTTTCTTCCCCCCTTCTTTTCTCCT
CTCTTTTTTTCCCCTTCTTTTTCCTTCCCCCTTCCCCCTCCTTTTTCCTT
CTTTTCTTTTCCCCTTCCTTCCCTCCTTTCTTTCTCTCCTCTTTTTTCCC
TTTCTCCTTTTTCTCCTCCCCCTTCTCTTCTTTCTACTCCTTTTTTTTCC
TTCTCCCTTTTTCCCCCTTTTTCTCTTCTCCCCTGCCTCTTTATCTTTTC
TTTTTCCTCGTTCTCCTTTCTTCTTCTTTGCCTTTTCTCTTTCCCTTTTC
TTTTTCTCCTTCTTGTTCTACCCTCCTTCCCTACCTCCTATTCTCCTCTT
TTTCTCCCCCN

Query= MSMg01no317_b24.b1 MSMg01no317_b24.b1 CHROMAT_FILE:
MSMg01no317_b24.b1 PHD_FILE: MSMg01no317_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:04 2005
         (681 letters)



>mm_chr3_140927639_140928720
          Length = 1082

 Score = 1191 bits (616), Expect = 0.0
 Identities = 663/679 (97%), Gaps = 1/679 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctgctattatccgctccttttacttttgaaagtcctgagtctttatattcaatgc 63
           |||||||||||||||  ||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 882 gaattctgctattatttgctccttttacttttgaaagttctgagtctttgtattcaatgc 823

                                                                       
Query: 64  cttttactgtaaaaggtagcttctatgaagagaaccgagggctttgaattaacacaaact 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cttttactgtaaaaggtaggttctatgaagagaaccgagggctttgaattaacacaaact 763

                                                                       
Query: 124 acagatagcaaggcagccatgcctattctaaaacaggctataatacctattttatctctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 acagatagcaaggcagccatgcctattctaaaacaggctataatacctattttatctctc 703

                                                                       
Query: 184 tttcaacccagtccttacagggagagattaatgtgaaatgatatcagaagaatcttatca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tttcaacccagtccttacagggagagattaatgtgaaatgatatcagaagaatcttatca 643

                                                                       
Query: 244 aaaataaaatgtagaagattcaagttatgtttatagactcatctcatccagtgaggacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aaaataaaatgtagaagattcaagttatgtttatagactcatctcatccagtgaggacat 583

                                                                       
Query: 304 taagaattagagaagtagaaaacagaaaggaaggatttgaagttgtgcagtgtttcaaac 363
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 582 taagaattagagaagtagaaaacagaaaggcaggatttgaagttgtgccgtgtttcaaac 523

                                                                       
Query: 364 actctgtcaagcgactttcatgagtagcaaggaacaggagcagtgttgtattttagagga 423
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 actctgtcaagtgattttcatgagtagcaaggaacaggagcagtgttgtattttagagga 463

                                                                       
Query: 424 atccaaaaatcaagggatgtttatgaatcagtaatacagttgaaaaattttgagaaacaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atccaaaaatcaagggatgtttatgaatcagtaatacagttgaaaaattttgagaaacaa 403

                                                                       
Query: 484 aagctgatgctgtcattgctgtgttgcagcctgtacagcgtggtgtccggaaccaagcaa 543
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aagctgatgctgtcgttgctgtgttgcagcctgtacagcgtggtgtccggaaccaagcaa 343

                                                                       
Query: 544 agcgatggcaacagaatacttgaacttttttttaattgatctcctgctgtacaagtctct 603
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 342 agcgatggcaacaggatacttgaactttttttaaattgatctcctgctgtacaagtctct 283

                                                                       
Query: 604 ccttgaaatttaacaagatggtcagctttggaaaggtagggaaataactaatacttgaga 663
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 282 ccttgaaatttaacaagatggtcagctttggaaaggtagggagataactaatacttgaga 223

                              
Query: 664 gattana-tatcttgaata 681
           ||||| | | |||||||||
Sbjct: 222 gattaaaatttcttgaata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space:   719312
Effective search space used:   719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)