BAC Information

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BAC

Clone NameMSMg01-317G01
Chromosome3 (Build37)
Map Location 148,684,994 - 148,685,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040354, Lphn2, LOC100040368
Downstream geneLOC668893, EG381483, LOC100040620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317G01.T7 (MSMg01no317_g01.b1)MSMg01-317G01.TJ (MSMg01no317_g01.g1)
ACCAG437462AG437463
length805715
length of high quality
(start - end)
47 (424 - 470)299 (121 - 419)
definitionCHROMAT_FILE: MSMg01no317_g01.b1 PHD_FILE: MSMg01no317_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:23 2005CHROMAT_FILE: MSMg01no317_g01.g1 PHD_FILE: MSMg01no317_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACAAAAAAAAANAGNAGNTCCCTCGANCCACCACCCCANNCCTCTCTAA
ATTTGGGCGCTAAACGAANACTACGTTCGTCACCGTCGGAATNAAANCAA
ATGACAAGCACCAGGCAANAAGNCCNACCNGNNNNNANGANGGAAACCAA
ACAGAANGGNCCCCCACAAAGAGGGAAAAGNCACGNAACNAACCAGAAGG
ANACAGNNCNNNNANNNNCCNANGGCACANNNACGNAGNNNNCCCCCNGG
NAACACAGGCANAACNGGANNNNNAAANANGAANNACANANGAAACNNGA
AGAGACCGGNAGAGGAAGCNGNCNAGCNCNNNCNCGNNAAAGCCAAGACN
NNNCCNTTTTTTTTTTAAGNACTTTCTTCAATACTTAGCTTAAGATGGTT
TGTTTTTTGATGCACCCACCAACTGACTGCCTAACGTCAGTGAGTATCTG
CCCCCCACCGCTCCTTTCATAATAAGAAGAGTTCCTTCCCATCAAGGAGT
CTGGCAGTTTCTTCAGTGCTATAGCCACTGCTAGCATACCAAGGTTCTTA
TAAACAAACCCCCACCCATATTAATGAGAACCATTGGGACACACTCACCC
ACACACATACACATGCGAAAACACAACACAAAAATCCACCATGATACTAT
AAAGAGAACCAACCAGCGAAAAAAAAAAGAATCCAACTAGAGAAACGATA
GTTTTTTTTTCTTGGGAAAACAGGGAGGCGGATATATGACAAAAAATGCA
CTCATAATACGAGGTATTGAAAAATGGTGCAAAATGGAACACTATTTATT
ATGGG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGATTAGGTGAAC
TATAGAATTTCCACAAAATTCTGGGAGAGCACTCTAGGGCACATATTAGA
GCCCATCCAGGTATCCCCATCAGGAGGTGCAGCGAGTCACCTCTTAGCAC
ATTTTTTTTTAAAGAAAACATAGCACTGTTGCTCAAAGAGCACACTGAAA
ATCCTGGTCTAGACAACCTGGGAATGAGAAAAACAAGAACTGAGAGTTGC
CTCAAGCCTCCAAGGAGACATGCAAATTGGTTCTAATTGGCTTCTCTTCA
AGAGCCTTTGGAGTCATCTGTGGATGAAGAGAGGCGAAGATTGAGTTCCC
CTCTTGGTCTTGACTTGGCTTTTCCAGCTGGGGTGTCGCCTCTCTTACTG
CCTACGTTGGACTCCCCCACCAGATGAAAGGAAGATTTTTGGCGCTACCC
ACAAACTCTGCATTCACTTATGAAACAATAATTGGTCAATTACCAGAAGC
AGATGCTTTTCTTCTGTGTCCAGAGAAATTATAAGTCTAAGAGAAAATTT
CACACCTCATAGGAATACTCATCATTGGCAGGATTGCTCTCCAAGATAAA
AGGAAGTTGTAATTAATTTAGAGATTATAACATAAAGAAGTTGATAATTC
TCGACCCAACATGATCTGAATTCCTCCTTGCAAATTCGATCCTGTATAGT
GCCATTTTGCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_g01.g1 MSMg01no317_g01.g1 CHROMAT_FILE:
MSMg01no317_g01.g1 PHD_FILE: MSMg01no317_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:23 2005
         (299 letters)



>mm_chr3_148684794_148685493
          Length = 700

 Score =  491 bits (254), Expect = e-143
 Identities = 284/294 (96%), Gaps = 1/294 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaggtgcagcgagtcacctcttagcacattttttttt-aaagaaaacatagcactgt 59
           ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 201 caggaggtgcagctagtcacctcttagtacattttttttttaaagaaaacatagcactgt 260

                                                                       
Query: 60  tgctcaaagagcacactgaaaatcctggtctagacaacctgggaatgagaaaaacaagaa 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tgctcaaagagcacactgaaaatcctggtctggacaacctgggaatgagaaaaacaagaa 320

                                                                       
Query: 120 ctgagagttgcctcaagcctccaaggagacatgcaaattggttctaattggcttctcttc 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgagagttgcctcaagcctccaaggagacatgcaaattggttctaattggcttctcttc 380

                                                                       
Query: 180 aagagcctttggagtcatctgtggatgaagagaggcgaagattgagttcccctcttggtc 239
           ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagcctttggagtcaccaggggatgaagagaggcgaagattgagttcccctcttggtc 440

                                                                 
Query: 240 ttgacttggcttttccagctggggtgtcgcctctcttactgcctacgttggact 293
           || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ttcacttggcttttccagctggggtgttgcctctcttactgcctacgttggact 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space:   200390
Effective search space used:   200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)