NNAAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGTTTATCTCTGTATAACAGAAAAGTAATTGGTACTTC
CTGTTACTTTTGTTGTTAAATTTGGGATTCTGATCTTGCAGCTGTCTTCT
TTTAGGTTTGTTCAAGGATTTCTTTCTTGTTCTTTCTAAAGTGTGGATCC
CATCCTTGTGTTGGTGTTTTCCCTTTACTTTCCTTTGAAGGGCTGGATTT
GTGGAAAGATATTGTGTGACTTTGGTTTTTTTTCATGGAATACGCTTGTT
TCTCAATCTATGGTAATTGAGACTTTTGCTGGGTATAGTAGCCTGGGCTG
CCACTTGTGTCCTCATAGTGTCTGTATAACATCTGTCCAGGATCTTCTGG
CTTTCATAGTCTCTGGTGAGAACCCCGGCGTAATTCTAATAGGCCTGCCT
TTATACGTTACTTGACCTTTTTTCGCTTACTGCTTTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATT
TATNTTATTGNNTTNNTTTTNTTNTNNNTTTNNTTTTTTTNTTTTTTTTN
TTTTTNTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTT

NNAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACCCCTAGAAGAGCAGT
CATTGCTCTTAACCACTGAGGCATCTCTCCAGACCCCCCTTTTTTTTCTT
ATAAGGAACTTTTCCCTTCAACCTGTCTGTGCTCCTGACAAAACAGTTCC
CCATAGCTCAATTATCTTTGTACAGATATTGTTATTAGATATGTTATATG
ATAATATTTGTTTTTACTTATAAGCATATGTAGATACATTTTTCTCCTTA
TATATATTTTTTGTGCTCTTTAAAGCATTTTTCTGTCAAGGAATGAAAAT
GACAATACTTAATAGGTCTGCATTGCTTCTAAGGAAGCATATTGTCTTCC
CTTCCTTAGCATCTGTTTTGAGACCCGATCTGTACAAATGGAAGCCCAGC
CTCCACAGTGAGTGCAGTCTTAATAAATCATCCTTGAAATCTAGATCTAG
TGAACCTATTATTCTGTGTTTTATCTATTCATTTTAAGGTAGTAAAATTC
TTTGATAATCATTAATACTTCACTTTTCACTTAGGCTATTATAATTAATT
ACAACTATCAAAAATAGAATCAGATCCAATTTTTTAAAAGTTAACCTACT
TTATGGAAAGTGCAGCTCATAATAATACTATGCACTTTTGTAAATGGTAA
GAAAATAGGTTTTTAAATGTTCTT

Query= MSMg01no317_h21.g1 MSMg01no317_h21.g1 CHROMAT_FILE:
MSMg01no317_h21.g1 PHD_FILE: MSMg01no317_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:30 2005
         (644 letters)



>mm_chr3_12875362_12876406
          Length = 1045

 Score = 1116 bits (577), Expect = 0.0
 Identities = 628/645 (97%), Gaps = 1/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacccctagaagagcagtcattgctcttaaccactgaggcatctctccagacccccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aggacccctagaagagcagtcattgctcttaaccactgaggcatctctccagacccccct 842

                                                                       
Query: 61  tttttttcttataaggaacttttcccttcaacctgtctgtgctcctgacaaaacagttcc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 841 tttttttcttataaggaacttttccctttaacctgtctgtgctcctgacaaaacagttcc 782

                                                                       
Query: 121 ccatagctcaattatctttgtacagatattgttattagatatgttatatgataatatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 781 ccatagctcaattatctttgtacagatattgttattagatatgttatatgacaatatttg 722

                                                                       
Query: 181 tttttacttataagcatatgtagatacatttttctccttatatatattttttgtgctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tttttacttataagcatatgtagatacatttttctccttatatatattttttgtgctctt 662

                                                                       
Query: 241 taaagcatttttctgtcaaggaatgaaaatgacaatacttaataggtctgcattgcttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taaagcatttttctgtcaaggaatgaaaatgacaatacttaataggtctgcattgcttct 602

                                                                       
Query: 301 aaggaagcatattgtcttcccttccttagcatctgttttgagacccgatctgtacaaatg 360
           |||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||
Sbjct: 601 aaggaagcatattgtcttcccttccttagcatctattttgaaagctgatctgtacaaatg 542

                                                                       
Query: 361 gaagcccagcctccacagtgagtgcagtcttaataaatcatccttgaaatctagatctag 420
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 541 gaagcccatcctccacagtgagtgcagtctcaataaatcatccttgaaatctagatctag 482

                                                                       
Query: 421 tgaacctattattctgtgttttatctattcattttaaggtagtaaaa-ttctttgataat 479
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 481 tgaacctattattctgtgttttatctattcattttaaggtaataaaaattctttgataat 422

                                                                       
Query: 480 cattaatacttcacttttcacttaggctattataattaattacaactatcaaaaatagaa 539
           | |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 421 cgttaatacttcacttttcacttaggttattataattaattaccactatcaaaaatagaa 362

                                                                       
Query: 540 tcagatccaattttttaaaagttaacctactttatggaaagtgcagctcataataatact 599
            |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 361 ccagatccaattttttagaagttaacctactttatggaaagtgcagctcataacaatact 302

                                                        
Query: 600 atgcacttttgtaaatggtaagaaaataggtttttaaatgttctt 644
           ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 atgcacttttgtaaatggtaataaaataggtttttaaatgttctt 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space:   656190
Effective search space used:   656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)