BAC Information

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BAC

Clone NameMSMg01-318B04
Chromosome3 (Build37)
Map Location 146,874,325 - 146,874,678
singlet/doubletsinglet
Overlap genenone
Upstream geneEdg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318B04.T7 (MSMg01no318_b04.b1)MSMg01-318B04.TJ (MSMg01no318_b04.g1)
ACCAG437970AG437971
length755754
length of high quality
(start - end)
374 (49 - 422)362 (64 - 425)
definitionCHROMAT_FILE: MSMg01no318_b04.b1 PHD_FILE: MSMg01no318_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:10 2005CHROMAT_FILE: MSMg01no318_b04.g1 PHD_FILE: MSMg01no318_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGATGCAGCGGA
ATTCCTGATCTTTTTTCACTTTTATCATGAATGGGTGTTGGATCTTGTCA
AATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTA
ATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATC
GATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTT
TCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGT
AGAGTACCTTCTACTTCTATCCCCCCCAATAGTTTGTGCAGAACTGGAAT
TAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTC
CTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTA
GGTGATATGGGACTGTTTATAAGGTCAACTTGATCCTGATTCAACTTTGG
TACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTT
TTTGTTGATTATAAGCTTTATGTTAAAGGATCTGATGGTGCTTTGGATTT
CTTCCAGATCTGTTGATATGTCTCCCTTTTCATTTCCGATTTTGTTGATA
AGGAT
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCGAATTCTAAGGGAAAGCCAAGAAGCAGATAAA
AAGAACTATCTGGAAAAGCAGAGAGCAAACAATTGCTCTTTCAGTCTCTC
TTTTCTGTGTAACCCAGAACATTCTCTGATCTCTGAGTTTTTAGTTACTC
TCCTTTTGTGCCTAGGGAACAATGACTTTATTCAGAAGGAATTTTCAACC
ATGTGCATACATAGCAGACACTCTCAGCAGCCAGTGTAACTGGAGGCCCC
CACGCTGGGTGGGGTCTACAGCTTAACTGCTATGTTGAAAACAGAAACAA
AATCAGGTATAAGAGCCAGGTCTAGTTCGTACACATCACAAAACTATTTC
TCATGGTCGGCAGACCTCTCAGCCGCCCCCACAAGTTCAAACGCATGTGA
AACTCATCCCATGTCCCAAGAGTAAGAGACCCAGTAACACTAGGCTGTAT
AAAACAGATGTGATGGAAGGAGAATATGGCATTAAAATGTACTGAAGATT
ACCGAAAGCAGTGCTTGCATCTCAGTCAGAAGTCATTGGATCTGGGGCAG
AGTCTCATACTGGTCTCTGTGGCCTATTCTCACAACAGTTTCTATTCTCC
ACTAATTTTGTACTAGACTTCCTTGACCATGCTTGGCCTTTGCACCAAGA
CCCTATGTTCTCTGCTTGGTTTGTCTCCTCCCACTTTTCCTTCTAGCTCA
AAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_b04.g1 MSMg01no318_b04.g1 CHROMAT_FILE:
MSMg01no318_b04.g1 PHD_FILE: MSMg01no318_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:11 2005
         (362 letters)



>mm_chr3_146874120_146874880
          Length = 761

 Score =  679 bits (351), Expect = 0.0
 Identities = 354/355 (99%), Gaps = 1/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctaagggaaagccaagaagcagataaaaagaactatctggaaaagcagagagcaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattctaagggaaagccaagaagcagataaaaagaactatctggaaaagcagagagcaa 500

                                                                       
Query: 66  acaattgctctttcagtctctcttttctgtgtaacccagaacattctctgatctctgagt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acaattgctctttcagtctctcttttctgtgtaacccagaacattctctgatctctgagt 440

                                                                       
Query: 126 ttttagttactctccttttgtgcctagggaacaatgactttattcagaaggaattttcaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttagttactctccttttgtgcctagggaacaatgactttattcagaaggaattttcaa 380

                                                                       
Query: 186 ccatgtgcatacatagcagacactctcagcagccagtgtaactggaggcccccacgctgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccatgtgcatacatagcagacactctcagcagccagtgtaactggaggcccccacgctgg 320

                                                                       
Query: 246 gtggggtctacagcttaactgctatgttgaaaacagaaacaaaatcaggtataagagcca 305
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtggggtctacagcttaactgc-atgttgaaaacagaaacaaaatcaggtataagagcca 261

                                                                  
Query: 306 ggtctagttcgtacacatcacaaaactatttctcatggtcggcagacctctcagc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggtctagttcgtacacatcacaaaactatttctcatggtcggcagacctctcagc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 761
Length adjustment: 9
Effective length of query: 353
Effective length of database: 752
Effective search space:   265456
Effective search space used:   265456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)