Query= MSMg01no318_d18.b1 MSMg01no318_d18.b1 CHROMAT_FILE:
MSMg01no318_d18.b1 PHD_FILE: MSMg01no318_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:23 2005
(705 letters)
>mm_chr3_114765527_114766634
Length = 1108
Score = 1276 bits (660), Expect = 0.0
Identities = 692/704 (98%), Gaps = 3/704 (0%)
Strand = Plus / Minus
Query: 5 gaattctgcatgtgctacctagtaagagaaaccctgtggtagaagaatgagtccttgttg 64
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gaattctgcatgtgcaagatagtaagagaaaccctgtggtagaagaatgagtccttgttg 739
Query: 65 ggggttctcaaaagaaagagctcactttgacgggagtggttatgaaatgtatgggagata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggggttctcaaaagaaagagctcactttgacgggagtggttatgaaatgtatgggagata 679
Query: 125 tgataggtcagctgtggtttctgatatctgggtaagcatggactgattccagggatgaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgataggtcagctgtggtttctgatatctgggtaagcatggactgattccagggatgaaa 619
Query: 185 acatccgctcagagagaacacagagaaggaaagtgagacactcggtatcttcagagtacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acatccgctcagagagaacacagagaaggaaagtgagacactcggtatcttcagagtacc 559
Query: 245 cagaaagtgaatatttacagatctcttggacggaacttaaagagttagaatgagcacatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagaaagtgaatatttacagatctcttggacggaacttaaagagttagaatgagcacatt 499
Query: 305 tgaattagcatgactcacagtaaatgtgcctcaaagatttttataatgatagtggcatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgaattagcatgactcacagtaaatgtgcctcaaagatttttataatgatagtggcatga 439
Query: 365 tcagatttatttccacgcttatttcagccaagaatcgaggcagtaattcagcagaagtat 424
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcagatttatttctatgtttatttcagccaagaatcgaggcagtaattcagcagaagtat 379
Query: 425 tttcaaaaggtgaaaaattattgtaaagagcctgaaaaaaaaa---ccaataggcaagtg 481
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||
Sbjct: 378 tttcaaaaggtgaaaaattaatgtaaagagcctgaaaaaaaaaaaaccaatagccaagtg 319
Query: 482 taactgcatcatctgagaaaagtagggtagagattggaaaggctagtgaagcaggagatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taactgcatcatctgagaaaagtagggtagagattggaaaggctagtgaagcaggagatt 259
Query: 542 tcaacactatcactcgtgggaattgatggacacccctgagaaacagttaaagaaacagga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcaacactatcactcgtgggaattgatggacacccctgagaaacagttaaagaaacagga 199
Query: 602 gcctgatatagctgtctcctgggaggctgtgccagagcctgacaaatacagatgaggatg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gcctgatatagctgtctcctgggaggctgtgccagagcctgacaaatacagatgaggatg 139
Query: 662 ctcacagccaatcactggactgagcacagggactccagtggagg 705
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 138 ctcacagccaatcactggattgagcacagggactccagtggagg 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1108
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1098
Effective search space: 763110
Effective search space used: 763110
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no318_d18.g1 MSMg01no318_d18.g1 CHROMAT_FILE:
MSMg01no318_d18.g1 PHD_FILE: MSMg01no318_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:23 2005
(674 letters)
>mm_chr3_114608251_114609323
Length = 1073
Score = 1280 bits (662), Expect = 0.0
Identities = 671/674 (99%), Gaps = 1/674 (0%)
Strand = Plus / Plus
Query: 1 tttaaaattattttatgaattgacattgcctgtgtaattaatggaaacaattaactatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaaattattttatgaattgacattgcctgtgtaattaatggaaacaattaactatag 260
Query: 61 cgaaggtgtaactaactgtgatctattactggttgtgatatttcaaagcctaccctagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaaggtgtaactaactgtgatctattactggttgtgatatttcaaagcctaccctagta 320
Query: 121 tatgatttaaaaaaaagtataatggtataatattttcacaggcttttcatataataggct 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgatt-aaaaaaaagtataatggtataatattttcacaggcttttcatataataggct 379
Query: 181 tttcatatttaatatttagaaagatctgagaaaaataaaacaattttattctaaacctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttcatatttaatatttagaaagatctgagaaaaataaaacaattttattctaaacctat 439
Query: 241 agtagtcttgacactgacattttgaaagcttcaaacagtgtgtgagagccatgttaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtagtcttgacactgacattttgaaagcttcaaacagtgtgtgagagccatgttaacaa 499
Query: 301 gcataatggtatatactaaggtatagctattaagcattttacaccacacaaaacatcatt 360
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 500 gcataatggtatatactaaggtatagctattaagcattttacaccagataaaacatcatt 559
Query: 361 gttttgtttatatattatttacttttccctttatgtccctgccctcatagtagcataatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gttttgtttatatattatttacttttccctttatgtccctgccctcatagtagcataatc 619
Query: 421 cattctgcttctcatctatctaatttagaatatcttataaaatatacatcaaaaaacaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cattctgcttctcatctatctaatttagaatatcttataaaatatacatcaaaaaacaca 679
Query: 481 attaacaaattagtacagaataaattcttggacttaaaatgggctatggctttctatgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attaacaaattagtacagaataaattcttggacttaaaatgggctatggctttctatgag 739
Query: 541 aatttgaaactgtgggctcttaatgacagctgtatgattgattggataagtctgggatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatttgaaactgtgggctcttaatgacagctgtatgattgattggataagtctgggatct 799
Query: 601 ttagtgtataaatacaatcattgtttgcagttacttcataatatcttattacatatagac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttagtgtataaatacaatcattgtttgcagttacttcataatatcttattacatatagac 859
Query: 661 ttgatttccccaaa 674
||||||||||||||
Sbjct: 860 ttgatttccccaaa 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space: 705832
Effective search space used: 705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
