BAC Information

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BAC

Clone NameMSMg01-318E05
Chromosome3 (Build37)
Map Location 119,188,038 - 119,188,276
singlet/doubletsinglet
Overlap genenone
Upstream geneDpyd
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318E05.T7 (MSMg01no318_e05.b1)MSMg01-318E05.TJ (MSMg01no318_e05.g1)
ACCAG438111AG438112
length786729
length of high quality
(start - end)
244 (40 - 283)336 (71 - 406)
definitionCHROMAT_FILE: MSMg01no318_e05.b1 PHD_FILE: MSMg01no318_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:25 2005CHROMAT_FILE: MSMg01no318_e05.g1 PHD_FILE: MSMg01no318_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGAATTC
TTCGGTTGTCCCCTATCTATTCAAGTCACTGATTTTGCTAAGAATTTGAG
TCACCTTGTATACTTGTATATTAGTTATTTTTTCAACTGAATGGTCAGCA
ATGTCTTCCTCTTTCCATTTCCTTCACTTTTGATATGGAGTACAGCATTC
CTACTGATCTGTTTTATTTTGTCTGCGGGTTCATTATTTCCTCAAAGCTT
TTAATATTTCATTCCCTTCTATTCCCTTTCCCTGCTGAAGATACTGCGGA
GAGATCAGGTGCCATTCTTATGTTCACTGTTGCAAAGTTAATACCATCTC
CTCTACTCACAATACACCATAGTTCCTGCTTCTCTTTATTGTTGATTCTA
TGAAGTATAGGTCTAACAAACCCCCATATATTTTTTTAATGTATCTCGTC
CTTTTTTCTACCCCTTCCCCCCTTCTTTTTCTTACTCTTTCCTCTCCTTA
TTCTACCTTATTTATTCCTTTTTTACCCTCCCCCTTCTCATTTCTTTACT
TTTTCCCCCCCATATTCTTCCTCCGCCCTTTTCTTTTTTTTCTTTATCTT
CCCTTATCCACTACTCACATTATCATAGCCCTAATTTTCTCTCTTTTCCT
TCTTCCCTATATTTTTCTTCTTTCCTCCATTTCCTCTCTTTTAATATCTT
TTTTATTCTTTACCTCTTTATCTCTCTTTTTATTACCCTTCTTTTTTCCC
CCTTTTCTTTCCTTTACTACATTAATTATCTTTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAA
CACCTGAAAAAAATTTCAGCATCCTTAATTATCAAAATGGCTAAGATCAA
AAATTTAGGTGACAGCAGATGCTGGAGAGGGTGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGCATTGCAAGCTTGCACAACCACTCTGGAAATCA
GTCTGGCGGTTTCTCAGAAAATTGGACATTGTACTACTGGAGGATCCTGC
AATACCTCTCCTGGGCATATATCCAGAAGATGATCCAACTAGTAAGAAAG
AAACATGCTCCACTATATTCATAGCAGCTTTATTTATAATAGCCAGAAGC
TGGAAAGAATCCACCCAACCATCTTCTTAGGAATGGATACAAAAAATGTG
GTACATCTACTCAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGTTGGACCTGGCGGGCATTATCCTGAGTGAG
GTAATCCAATCACTATAGAACTCACATGATATCTACTCACTGATAAATGC
ATATTATCCCAGAAACTTAGAATCTCCTGTCACTTTTTAAGGCACTTTTG
TGTTTCTTCTTTATGGCTCCCACCTGTTTTTGATGTGCTCCCTCCGTTTT
CTTTATGTGAGTTATTACCGCCTCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_e05.b1 MSMg01no318_e05.b1 CHROMAT_FILE:
MSMg01no318_e05.b1 PHD_FILE: MSMg01no318_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:25 2005
         (244 letters)



>mm_chr3_119187833_119188476
          Length = 644

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttcggttgtcccctatctattcaagtcactgattttgctaagaatttgagtcac 65
           |||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttcggttggcaagtatctattcaagtcactgattttgctaagaatttgagtcac 265

                                                                       
Query: 66  cttgtatacttgtatattagttattttttcaactgaatggtcagcaatgtcttcctcttt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttgtatacttgtatattagttattttttcaactgaatggtcagcaatgtcttcctcttt 325

                                                                       
Query: 126 ccatttccttcacttttgatatggagtacagcattcctactgatctgttttattttgtct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccatttccttcacttttgatatggagtacagcattcctactgatctgttttattttgtct 385

                                                                      
Query: 186 gcgggttcattatttcctcaaagcttttaatatttcattcccttctattccctttccct 244
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gggggttcattatttcctcaaagcttttaatatttcattcccttctattccctttccct 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)