BAC Information

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BAC

Clone NameMSMg01-318E08
Chromosome3 (Build37)
Map Location 69,808,981 - 69,809,085
singlet/doubletsinglet
Overlap genenone
Upstream geneSmc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik
Downstream geneGm414, LOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318E08.T7 (MSMg01no318_e08.b1)MSMg01-318E08.TJ (MSMg01no318_e08.g1)
ACCAG438117AG438118
length727733
length of high quality
(start - end)
80 (74 - 153)106 (170 - 275)
definitionCHROMAT_FILE: MSMg01no318_e08.b1 PHD_FILE: MSMg01no318_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:25 2005CHROMAT_FILE: MSMg01no318_e08.g1 PHD_FILE: MSMg01no318_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAA
TTCCAAGAATTTTCCAAAAAGATGAATCACTGTGAACTCTGAATGCATTG
AAGGACATCCTTAGCTGTTAACTCAATGTGAAAGCAATGGATCCAAGAAG
GCAAGAGGACTGGGTAAACAGAGCCCCCCATGGAGGGCAATAAAGAAGCA
GCTCAGATGTGAGTTTCGAGTACTTCTGACCAGGTTCCTGTCCTGGATCA
CATGACCACGACGCCGCATAAAAAGGTCTGTGACAATCAGTCACATATGG
TCAGTGCGCTGAAGCCCCTTCTCTTGCAAATAACGTATCCTTAACATCCC
AGACCAAGGCTATTTTTTTTTCTCCCCCTCGCCCATCCCAACTCACCTCC
AAATGTATGTGATACCCCCCACACCCTGTATGAAACACACACGCGTGTTA
TCTCATCTAAGACCATTTGAGAGCATCTGTCGCACAGAGAGCCTCTACCG
TTTTGGTGAGGAGAAACTCTCTCTGGAAGCCATTGTCCCTGCCTATTCCT
GTGCGGCGGATCCAACCTGAACCCCTAGCCGTATACTCTGTCATAGCAGC
TTGCCTTGGTAACACAGACCTGTTGGTTCGTCTAAAATCCTCCTCTTTTT
CAGAGTGTAAGTTTTCCGCCCTTTTTTTTCATTGTCTCGAGCCCCTTACG
ACTCTCTGTTTTTATCTTTTTTTCTTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAAAATTCTATTAAATGAATGTGTTATACTTTTAT
TGACTGTCCATCAAGTGAGGCCCATTTAAACTCTTTCCAATTTTTAAACT
CATTAAAGTGTTGACATGACTATTTTCCTGCATTCATTATTGTGCATACA
AAGAACTTCCCTGGAACAGCTAGCTCTCTGGATTTAAGCTCACATGTAAC
CCTGTAGAGAGATCGCTTAAATAATAATCACAGAATTGCTTGCTATAAAG
GCACAAGGGGCTGGAGAGATGTTTCTGCCAACAAGAGTACTCCTTGCTTC
CGCAGATGACCTCTGTTTTTTCCCACCCCCCACCCGTATAAGCATAGNAG
GTTGTAATTCTATTTTTTTCCCCCCCCCAAAAAAAAAAACATTGTTAGAT
TGGGATTTCTGTTTGTTTGTCTGCCTTGGTTTGTTTGTGCACCTTGTATG
TCCCCATCTTGACCGTGGTAATCCTTTCCTTTTAATATTCCCTTGACCCT
GACCCACCGACAATTCCATATTATCCCTCACCCCTCCACTATCTAGACCT
TTATTCACTTATTGTTCACCCTCTCTATACTTATTAAAAATTGACTTATC
ACTTGCCTTCAACTTTTGTTTCTTCCTTAGTAATTGGGCATTCTTCTCCC
TATGTTCTCCTATTTCCCGTTAATTATCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_e08.g1 MSMg01no318_e08.g1 CHROMAT_FILE:
MSMg01no318_e08.g1 PHD_FILE: MSMg01no318_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:25 2005
         (106 letters)



>mm_chr3_69808781_69809286
          Length = 506

 Score =  203 bits (105), Expect = 2e-57
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattttcctgcattcattattgtgcatacaaagaacttccctggaacagctagctctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctattttcctgcattcattattgtgcatacaaagaacttccctggaacagctagctctct 246

                                                        
Query: 61  ggatttaagctcacatgtaaccctgtagagagatcgcttaaataa 105
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggatttaagctcacatgtaaccctgtagagagatcgcttaaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)