CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAATTCCATTACCATATTTCTCATACTCATATATTCTGTTGCAATG
CTGTGGAATGACTCTAGGAAGGCAAAGATGTGTCTGCTATATAAGTAGAC
TGTGTTACTGTTGACTTTCTTTTCCACTGTAAAATCAGGAAACATCAAAC
CCCAAGCATTAGCTGCCAAACAAACAGTATTTCTTCAATATATTGAGAAT
ACAAACTTTCACCTTACAAAAGTGGTATTTTTATTTTTGCATACCAGACA
TTTATTATAGCATGATATATTTGAAACAACATATACCATTTAAATCTGTC
TTTAGGAGCTAATTAAAAAAATAAAAAAAGAAATTTAAGAAGCAGAATTT
AGTCAGAATGGTGGCATAAGTACCCAATCCCAGTACCCAGAAAGCAGAGT
AGGATGGTTATCTGAGTTCCAGAACAGCCTGGTCTACAGAATGTGTTACA
GGACAGCCAGCGATACAGGAAAACTCTGTATTGAAAAAAAAAATGAAGAA
AATGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAATATTTCCTTGTCTATTCT
CTCCCTCTATCTTTTCCCACCTTTTATTCTTAATTCCCCTTCCTAACCTC
TCTTTCATTCTTTCTTTTTG

ATGAAGTGGGAGGCCTGGNGGACGCCTGGCTTTCGGACCGGGNGAACTAT
AGAAGGATTCGCGAAATACTACTGATTTATAGGGAAGAATTGACTTTGTT
TTAAAGTGTTTCACTTTCCTCTTCTTTTTTATTTTGAAACAGGCTCTTAT
TAAATTGCAGAAGTTGGCCCCACATTTGCAATAAACCTGCCTTCATCTTT
CAACAACTTGGAATGATGGGCATTTCTTATTATGTCTGTATTTAAAGACT
TTTTTATCAAAAATATTAGCCATGTCATTCAGACAAATAATAGCAATCAA
CTTTTTAATTGCTGACTTTTCTAATTCTATTNAACACCAAAGAATTGAAA
AACAGGTTTTTTTTTTTTCCCACCCCCCCCCGCATCAAATTTTGTCTTGT
ACATATGACAGATANTCCCCCCAAAAAAAAAAAACCCAGGAATTCGGGGA
CTTTTCTTAAATTTTTGGTATAAGCAGCTAAATTATTTTAATAATACAAT
AGGTAATTAGGTAAAGTGAATATCTGACAAAGGGAGTTTTAAATCAACTA
TAATATTTTATTTTATAATAAAAATAGCCTGAATCTGAATGGGATTTTAG
ATTGCTCCTAAATTTATCCATGAATTATTGACCTGTACTGATTTTTATAG
GTTGTATTTCTGTGGACTGTAGGGGAGAAATACTAAGTACTTTCTATCAA
GGAAGCAAATCA

Query= MSMg01no318_k24.b1 MSMg01no318_k24.b1 CHROMAT_FILE:
MSMg01no318_k24.b1 PHD_FILE: MSMg01no318_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:54 2005
         (582 letters)



>mm_chr3_12434259_12435240
          Length = 982

 Score = 1050 bits (543), Expect = 0.0
 Identities = 558/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaattccattaccatatttctcatactcatatattctgttgcaatgctgtgga 63
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaattccattagaatatttctcatactcatatattctgttgcaatgctgtgga 263

                                                                       
Query: 64  atgactctaggaaggcaaagatgtgtctgctatataagtagactgtgttactgttgactt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgactctaggaaggcaaagatgtgtctgctatataagtagactgtgttactgttgactt 323

                                                                       
Query: 124 tcttttccactgtaaaatcaggaaacatcaaaccccaagcattagctgccaaacaaacag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcttttccactgtaaaatcaggaaacatcaaaccccaagcattagctgccaaacaaacag 383

                                                                       
Query: 184 tatttcttcaatatattgagaatacaaactttcaccttacaaaagtggtatttttatttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttcttcaatatattgagaatacaaactttcaccttacaaaagtggtatttttatttt 443

                                                                       
Query: 244 tgcataccagacatttattatagcatgatatatttgaaacaacatataccatttaaatct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcataccagacatttattatagcatgatatatttgaaacaacatataccatttaaatct 503

                                                                       
Query: 304 gtctttaggagctaattaaaaaaataaaaaaagaaatttaagaagcagaatttagtcaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtctttaggagctaattaaaaaaataaaaaaagaaatttaagaagcagaatttagtcaga 563

                                                                       
Query: 364 atggtggcataagtacccaatcccagtacccagaaagcagagtaggatggttatctgagt 423
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggtggcataagtatttaatcccagtacccagaaagcagagtaggatggttatctgagt 623

                                                                       
Query: 424 tccagaacagcctggtctacagaatgtgttacaggacagccagcgatacaggaaaactct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccagaacagcctggtctacagaatgtgttacaggacagccagcgatacaggaaaactct 683

                                                                       
Query: 484 gtattgaaaaaaaaaatgaagaaaatgaaaggaaggaaggaaggaaggaaggaaggaagg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtattgaaaaaaaaaatgaagaaaatgaaaggaaggaaggaaggaaggaaggaaggaagg 743

                                  
Query: 544 aaggaaggaaggaaggaaggaag 566
           |||||||||||||||||||||||
Sbjct: 744 aaggaaggaaggaaggaaggaag 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)