Query= MSMg01no318_m17.b1 MSMg01no318_m17.b1 CHROMAT_FILE:
MSMg01no318_m17.b1 PHD_FILE: MSMg01no318_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:02 2005
(279 letters)
>mm_chr3_81812558_81813236
Length = 679
Score = 524 bits (271), Expect = e-153
Identities = 277/279 (99%)
Strand = Plus / Plus
Query: 1 ccaaggtaacttcagatctgtttaaaaacaggaccaaaagtaagctttagaattgaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaggtaacttcagatctgtttaaaaacaggaccaaaagtaagctttagaattgaatgc 260
Query: 61 ttcctttgggcagtcacccaaaaaactaacgtggaagagaagcagccatgagaccagcta 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ttcctttgggcagtcacccaaaaaactaaagtggaagagaagcagccatgagaccagcta 320
Query: 121 gcccttgtggcagccttccacatgacagtgttttactcaggaaattcactaattagcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccttgtggcagccttccacatgacagtgttttactcaggaaattcactaattagcttt 380
Query: 181 ctgaatttgcatccactcccttgttctcttggcatgtggacagcttgtcctttccagagt 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ctgaatttgcatccactcccttgttctcttggcatgtagacagcttgtcctttccagagt 440
Query: 241 tagaaagtttaagtgaagtaacataaaatgccccctact 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaagtttaagtgaagtaacataaaatgccccctact 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no318_m17.g1 MSMg01no318_m17.g1 CHROMAT_FILE:
MSMg01no318_m17.g1 PHD_FILE: MSMg01no318_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:02 2005
(645 letters)
>mm_chr3_81961639_81962682
Length = 1044
Score = 1031 bits (533), Expect = 0.0
Identities = 621/663 (93%), Gaps = 23/663 (3%)
Strand = Plus / Minus
Query: 1 catagaggagcactgtatcacttctgccccacactctgcccctccaactccttctatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 catagaggagcactgtatcacttctgccccacactctgcccctccaactccttctatgtt 835
Query: 61 ctcagtactctcttttatcttcctggcctttgctttaattattattggtacagggattga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ctcagtactctcttttatcttcctggcctttgctttaattattattggtacagggattga 775
Query: 121 ggggttttggttacacagtatctaagagcatcctctcctcacacctggtctccaattctc 180
|| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 774 ggtgttttggttacacaatatctaagagcatcttctcctcacacctgatctccaattctc 715
Query: 181 caaggtcagttttccccacatgaaactctgttctgacagatttctctttcttttttcttt 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 714 caaggtcagttttccccacatgaaactctgttctgacaggtttctctttcttttttcttt 655
Query: 241 tttt--------------ttctcctttcttgaactttttatatcacagtctgttttcttt 286
|||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 654 ttttctttttctttttttttctcctttcttgaactttttataccacagtctgttttcttt 595
Query: 287 cacctttacttacatctttgaagaagaccgcaatggtggcaattgcttacagattcccca 346
| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||| || |
Sbjct: 594 cgcctttacttacatcttttaagaagaccacaatggtggcaattgctttcagatttccta 535
Query: 347 cccc----acataatgtgcctgcttcttgttgtttctaacatttcattatctctggttta 402
||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 534 ----gtgtacaaaatgtgcctgcttcttgttgtttctaacaattcattatctctggttta 479
Query: 403 gtcatttaaacaaaaagtgtatgagtagagttttaaaatttcagttatttccctgggcat 462
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 478 gtcatttaaacaaaaagtgtataagtagagttttaaaacttcagttatttccctgggcat 419
Query: 463 ggatggcatagaatcccaggactttagaggcaggatcggaagaccaggagtacaaagtta 522
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 418 ggatggcatagaatcccaggactttagaggcaggaacggaagaccaggagtacaaagtta 359
Query: 523 tctttgggcacataatcagttgagtctgaggacagcctggacagacatgaaagtctacct 582
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 358 tctttgggcacataatcagttgagtctgaggacagcctggact-acatgaaagtctacct 300
Query: 583 gaagaaaaactttaaaaagttattatgtggagtttttaggctaatgagagaataagttat 642
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 299 gaagaaaaactttaaaaagttattatgtagagtttttaggctaatgagagaataagttat 240
Query: 643 tga 645
|||
Sbjct: 239 tga 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
