Query= MSMg01no318_o16.b1 MSMg01no318_o16.b1 CHROMAT_FILE:
MSMg01no318_o16.b1 PHD_FILE: MSMg01no318_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:10 2005
(708 letters)
>mm_chr3_76105669_76106776
Length = 1108
Score = 893 bits (462), Expect = 0.0
Identities = 505/532 (94%), Gaps = 24/532 (4%)
Strand = Plus / Minus
Query: 190 aaacatttgaacctactataaggtagttatttttaatatatgttatatatacacaaatg- 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 aaacatttgaacctactataaggtagttatttttaatatatgttatatatacacaaatgt 1049
Query: 249 -----------tatatatatatatatatttgtgtttatgtacatggatatgtatatatat 297
||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 1048 atgtatatatatatatatatatatatatttgtgtttatgtacatgg--atgtgtatatat 991
Query: 298 atatgtgcatttatatatatggtagtgttctagtgaatataaacaaaataaaggcaaccc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 atatgtgcatttatatatatggtagtgttctagtgaatataaacaaaataaaggcaaccc 931
Query: 358 attacagggataatgacacacccccc-----gctgggtctgtgaaagttgaccctaagtt 412
|||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct: 930 attacagggataatgaga-a----tctgtttgctgggtctgtgaaagttgaccctaagtt 876
Query: 413 tttaggtgaatagctggaaatattatttactgagcagattccctttgtacctaaattaca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tttaggtgaatagctggaaatattatttactgagcagattccctttgtacctaaattaca 816
Query: 473 agtaccttgaaatgtaagatttacagtcattactacagtacagagaccttatttaatcag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 agtaccttgaaatgtaagatttacagtcattactacagtacagagaccttatttaatcag 756
Query: 533 tcattagatttactagatactcatgaatatataagcttttcatgagtccaggaactatat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tcattagatttactagatactcatgaatatataagcttttcatgagtccaggaactatat 696
Query: 593 gcattctgaacagagatggaaaatgttgaatttaaaagcaaaaagcatccctgtctcaga 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gcattctgaacagagatggaaaatgttgaatttaaaagcaaaaagcatccctgtctcaga 636
Query: 653 agcttgttttgtagaacacgacaaaaatcttccctgccatggcaatagcctt 704
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agcttgttttgtagaacacgacaaaaatcttccctgccatggcaatagcctt 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no318_o16.g1 MSMg01no318_o16.g1 CHROMAT_FILE:
MSMg01no318_o16.g1 PHD_FILE: MSMg01no318_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:10 2005
(325 letters)
>mm_chr3_75960713_75961437
Length = 725
Score = 613 bits (317), Expect = e-180
Identities = 323/325 (99%)
Strand = Plus / Plus
Query: 1 gacaagaaagatgtacgaggggttgttcagtgagtaaatctgaatactattaataatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaagaaagatgtacgaggggttgttcagtgagtaaatctgaatactattaataatcag 260
Query: 61 gaaaggtccgaggttataattaatcatctaaaggtactatttaagatacatcgtttcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gaaaggtccgaggttataattaatcatctaaaggtactatttaagatacatagtttcaca 320
Query: 121 agtagtaataaaaatcagaatcttcaggcttagaaacaaagcacaatccaattatcatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtagtaataaaaatcagaatcttcaggcttagaaacaaagcacaatccaattatcatag 380
Query: 181 caataatagtaggcatagtatcaacatttggactatattattattattttttaatttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caataatagtaggcatagtatcaacatttggactatattattattattttttaatttttt 440
Query: 241 tattattacgtattttccttaattacatttagaatgctatcccaaaagtcccccataccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattattacgtattttccttaattacatttagaatgctatcccaaaagtcccccataccc 500
Query: 301 tcccccccttccctacctacccatt 325
|||||||||||||||||||| ||||
Sbjct: 501 tcccccccttccctacctactcatt 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
