BAC Information

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BAC

Clone NameMSMg01-319A13
Chromosome3 (Build37)
Map Location 120,402,956 - 120,403,297
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319A13.T7 (MSMg01no319_a13.b1)MSMg01-319A13.TJ (MSMg01no319_a13.g1)
ACCAG438669AG438670
length748742
length of high quality
(start - end)
235 (121 - 355)342 (64 - 405)
definitionCHROMAT_FILE: MSMg01no319_a13.b1 PHD_FILE: MSMg01no319_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:19 2005CHROMAT_FILE: MSMg01no319_a13.g1 PHD_FILE: MSMg01no319_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCC
CTCCATTATCCTACATTGATTGGTAGTTTAGTTCCTAGGAGTGGTTCTGG
ATAGTTGATACTTTTGTCCTTTCTATGGTGTTCCAATCCCCTTCAGATCC
TTCAGTCCTTCCCCTAGCTCTTCCATTGGATTCCCTGGGCTCAGTTCACT
GGCTGCCTGTGAGTATGTGCATCTGTATTAATTGGGTGCTGGCAGAACCT
CTCAGGGAACAGCTGTACCAGGCTCCTGTCAGCAAGCACTTCTTGGCATC
AGCAATAGTGTTGGTGTTTGGTGTCTGCAGATGGAATGGATCCCCAGGTG
GGTTGGTCTTTGGATAGCCCTTCCCTCAGTCTTTGCTCCATTTTCTTGTC
CCTGCATTTCCCCCCCCCACCAACAAAAATATGTTAAACATTTTGAGATG
GGTGAGTGGCCCCATCCCTCAACTGGGAGCCGTACCTATCTACTGGAGGT
GGTCTCTACAGGTGCTCTCTCCCCTTTGTTGAGCATTTTGGCTAATGTCA
TCCATGAGAGATGGTTCGGCCATGAAAGGCTAGGCTTACGTCTGAAAATT
ACATTTTTAGATGTATTGATAACCGTTGCATTTGCTGGCATACCTTGCTC
AAAGCTCCACTTTTTTTTAACAACCTCTGCTTTGTTTGTGCCTGTGTATG
GGGTGTATTCCGTTCTCTTTCTCCCCTACCTGTCTTCTCTCACTTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCAGAAATTCCCTTTTGGAATTTTATATTATCTACTGGTGATCC
TTAATTACTGTTTGCACTCCTTCCCTAACTTTTCCATTGTTTATTTAATT
CATTTAAGTAAATTCTATTAATAAGGCAGGATCTCTACCTTTAAAACAGA
GACAGGTGTCGGCCAGGATTGTACAGACTCTACATTCTGATTCTTATATC
CCATAGACATGGATTGCCGTAGCCAACTCCATTTCCTGTTCTGTCAACAC
TGGGCCTTTCACTTCGGGGAGAGTTCCTCGTTGCCTGCTGTTGGATCCCA
GGAACAAACTATAGTTGGTTGTGTTAGGATTTTGTAGGTGTGATAAATTG
TAGATATCCCCCCCCCCCAAAAACAGTATTATGTTTTGGCTGGTTTGGGG
GTTTCAATTCATATCCTTTAGGTCCATGATGATACAGAACTTCTTATTAC
AGAAGTCACTTGCTGTCCCTGTTGACAGGATGCAGAGAGATAGAATGGCA
TTTTGTACCATGTATGTTCCTTAAGGATGGTGTTCTACCCCCCCTGACTT
TTCTTTATTTAGGCATCCCGTTTCCTAAATCTTAATGATTTCTACCCCCG
AATTTTTTTATCCTTGGCGTAATCCTTTATCGACTGCCCTATCTGATTTA
TTAATCCTTTCCAAATCATACTCGTTCGTCAATAATGCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_a13.g1 MSMg01no319_a13.g1 CHROMAT_FILE:
MSMg01no319_a13.g1 PHD_FILE: MSMg01no319_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:19 2005
         (342 letters)



>mm_chr3_120402756_120403497
          Length = 742

 Score =  592 bits (306), Expect = e-173
 Identities = 333/342 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcccttttggaattttatattatctactggtgatccttaattactgtttgcactccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 542 ttcccttttggaattttatattatctactggtgatccttaattactggttggattccttc 483

                                                                       
Query: 61  cctaacttttccattgtttatttaattcatttaagtaaattctattaataaggcaggatc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cctaagttttccattgtttatttaattcatttaagtaaattctattaataaggcaggatc 423

                                                                       
Query: 121 tctacctttaaaacagagacaggtgtcggccaggattgtacagactctacattctgattc 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 422 tctacctttaaaacagagacaggtgtaggccaggattgtacagactctacattctgattc 363

                                                                       
Query: 181 ttatatcccatagacatggattgccgtagccaactccatttcctgttctgtcaacactgg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 362 ttatatcccatagacatggattgccgtagccagctccatttcctgttctgtcaacactgg 303

                                                                       
Query: 241 gcctttcacttcggggagagttcctcgttgcctgctgttggatcccaggaacaaactata 300
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 302 gcctttcactgcggggagagttcctcgttgcccgctgttggatcccaggaacaaactata 243

                                                     
Query: 301 gttggttgtgttaggattttgtaggtgtgataaattgtagat 342
           ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttagttgtgttaggattttgtaggtgtgataaattgtagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)