BAC Information

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BAC

Clone NameMSMg01-319C06
Chromosome3 (Build37)
Map Location 59,022,654 - 59,023,005
singlet/doubletsinglet
Overlap geneP2ry12
Upstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13
Downstream geneIgsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319C06.T7 (MSMg01no319_c06.b1)MSMg01-319C06.TJ (MSMg01no319_c06.g1)
ACCAG438746AG438747
length724723
length of high quality
(start - end)
356 (67 - 422)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no319_c06.b1 PHD_FILE: MSMg01no319_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:26 2005CHROMAT_FILE: MSMg01no319_c06.g1 PHD_FILE: MSMg01no319_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATAGATTACCCGATTAATTATGAGTTGGAATCATAAATGGAGAATT
TCAAAGAGATTGGTATAAAATCCCTTCTGGGAAATGAATTCATATATTAA
ATAGTAAATAGTAGAAAATAATAATCCAAAAAATTTTCCTTTGCATTGAG
AAATATCTTTGCCTGTGTTCAGTCATGCAATAAAATATTAGCCTCACAGA
GACTCATGATTTAGAGTGCTTTTAGCCCATGCATTTCTCGTTTTCAGCTC
ATTCATTATATTTGAAGTTTGTATATGTTTTTGAATATCATTCAGAGTGA
ATCCTAAAATGGTAATAATGATGATGCAGGCCATAGATTCTCTATCTGTG
ATCATTACTTGATATTTCCCCCCGCCGCCAGAGCATCATTCCTGGCATAT
TTAATGGTAGCTAAAATAAAATAGCAGAATCGGATCCTTATCTGATATCC
TAGATTATCACACAACAGACGGGGGAAGGAATAGGAGCAGTTGACTTGGC
TGTCTTGTATCTAACTTGAAATTTAAGATGAAATTTAAAACTTTTCACAT
TTCCATCAAATAAATAAAATGATTTTTCATAAAATGGGATTCCTCATATT
CAAATATACAGTTTGAAAACCCCACAAAACTCTCATGGGAGAATTAACGT
GATAACTGAAGATAGCACATACTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGAAGGGGACATTGATGTACC
CACAAAACTTTCAACCCAAAACTTGTCCTGCCTATCTGATGTGCAGGGAT
AAAGATGAAGTAGAAACTGAAAGAATCACCGGCCCAACTTGAGCTCTATC
CCATGGAAGAGCGCCAACCTCTGACACTACTAATGATATTTTGCTATTCT
TGCAGACAGGAATCTAGCATAACTGTCTCCTAAGAGGCTTCATCCAGCAA
CTAATGAAAACAGATGCAGAGACCCACCGCCAAACATCAGGCAGAGTTTA
GGGAGGCTTGTGTTTTTAATTGACCCACCCCCCCCGGTCAAAGACACCAT
AAGAAGACCTAAAGAGTCCCCCCCCCCCCCACATGGTGGCTCACAAAAGC
TGAACCATCATCCAAAGAGCATATAGGGGCTGGACCCAGGCCCACTACAC
ATTTGAAGATGTGCCGCTCAGTCTTCATGTGGGCTCCCTAACAAGTAGAG
AGGATGCTGTCTAGGTCTTTGTGGACTGCCATTGAATCTCTTTCCATAAC
TGGACTGCCTGGTCCAGTATCAGTGTGAGAGGATGAGTTCAGCCATGCTG
TGACTTGATGTCCCAAGGTATACTGGTATCCATGTACGGCAGGTGACTAG
GTTTGTGGTTCTTTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_c06.b1 MSMg01no319_c06.b1 CHROMAT_FILE:
MSMg01no319_c06.b1 PHD_FILE: MSMg01no319_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:26 2005
         (356 letters)



>mm_chr3_59022454_59023209
          Length = 756

 Score =  658 bits (340), Expect = 0.0
 Identities = 349/352 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaattatgagttggaatcataaatggagaatttcaaagagattggtataaaatccctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 attaattatgagttggaatcataaatggagaatttcaaagagattggtataaaatcactt 260

                                                                       
Query: 61  ctgggaaatgaattcatatattaaatagtaaatagtagaaaataataatccaaaaaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaaatgaattcatatattaaatagtaaatagtagaaaataataatccaaaaaattt 320

                                                                       
Query: 121 tcctttgcattgagaaatatctttgcctgtgttcagtcatgcaataaaatattagcctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctttgcattgagaaatatctttgcctgtgttcagtcatgcaataaaatattagcctca 380

                                                                       
Query: 181 cagagactcatgatttagagtgcttttagcccatgcatttctcgttttcagctcattcat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 cagagactcatgatttagagtgcttttagcccatgcatttctcattttcagctcattcat 440

                                                                       
Query: 241 tatatttgaagtttgtatatgtttttgaatatcattcagagtgaatcctaaaatggtaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatttgaagtttgtatatgtttttgaatatcattcagagtgaatcctaaaatggtaat 500

                                                               
Query: 301 aatgatgatgcaggccatagattctctatctgtgatcattacttgatatttc 352
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgatgatgcaggcaatagattctctatctgtgatcattacttgatatttc 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)