BAC Information

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BAC

Clone NameMSMg01-319C07
Chromosome3 (Build37)
Map Location 84,399,746 - 84,557,690
singlet/doubletdoublet
Overlap geneTigd4, Tmem154
Upstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369
Downstream geneLOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319C07.T7 (MSMg01no319_c07.b1)MSMg01-319C07.TJ (MSMg01no319_c07.g1)
ACCAG438748AG438749
length744741
length of high quality
(start - end)
226 (128 - 353)286 (127 - 412)
definitionCHROMAT_FILE: MSMg01no319_c07.b1 PHD_FILE: MSMg01no319_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:26 2005CHROMAT_FILE: MSMg01no319_c07.g1 PHD_FILE: MSMg01no319_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,399,746 - 84,399,971)(84,557,407 - 84,557,690)
sequence
TCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAGAACCGCGGAA
TTCGTTTGTTCCCTTAAAATTTTTTGGTTGTTTTTTAAAGAAAGGGTCTC
ACTGTGTAATCCAATTTGCCCAAAATTCATGGCAGTGCTCCTGCCTTGGC
CTCTCAAATGCTGGGATTGTCGGTATAAGCCAATATGTACAGTCTAATTA
AACTTTTGAGCATCATAGTAGTATAAAATTATGTTCTAATTAGTTAATCT
TCCAGACTGAAAAAATTTATGAAAATATATTCTAAGCTGCTGTGCACCAA
GATGATGAACAATGTGGTTCTTGTTGCTTTCAAATTACTTGTCCAATTAA
GTCACATGGAATTTTATTGCTCTGCCTTCTATCACCAGGAGAGAGGCGTC
CTTCTGCTGTGTTTGTGCCCCCCCCCGCCCAAAGATAAAATACTTGATGG
GAAATAGTTATTACATGCATATTTATATTTTAATATGTAGGCAATTGAAG
ACCTTCTTAGAATCACCCATAAGAAAACTTGTGGTTCCTTTTTTACAAAT
TGTTTGATCTCACCCCTTTAATCCATTTTTGTTTTTTGAATACATAATGA
CTCTCACTGTATATGTATCTATATCATTGTTCTTTGTCTTTTTCTCATTG
AAATGTAGTCAATACAATGTTTCCTTTGTATATTTAGAATATTTCTTCTT
TTCTGATTTATAAAAACTTATTACGCCCTTATTTTATATCGTTT
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTACTAACACCAGAGGAGAGAAAAAA
AATCTGAGAGGACAGCTTTGTACCCGGGACCTTAGTGAGAGGTGACTAAG
AATTACATCAAATCCTCAGTAGGGGATCAAAAGTTAATAGCAAAATTATT
CCATAGCTCTCTGTGTTAGCTCATATGCATTTTGATTAGGTTAACTATTT
GGCTCACTCTCTATTCTTTCCTAATAAAATTATTCAATCAAGCCAAACTT
CTTTGGGAGTCTATGTGCATTTGTTGGTATGCATGTGCCTATGCAGGTCA
GGGGTCAATCTTGGTGTCATTCCTCAGTGTAATGTCAGGGAAATATTAGT
GATCCCCCCCTAAAAACCCACTCCTCCTACCCAATGTAATCTCAGTAGGG
CCTTTTTATTTTATTTGAGCTAGCTCAGGCCCCTCAGCACACAGCTGTCA
CTCAGGATGATTTTGTTGATGAGGAGCTCCAAATATCTATGGGGCAAGGC
TTTATTGGAATTAGTAGGTGGTTGTGTACGAGCTTTTCTCTTTCTTTTTT
TACGCTTCATTTATATTCTCTCTGATTTTTTTCCCTCTCCCTTCTTTTTA
TTTCTTTTCGTTTTGTTTTTCTCTATGTATGCTCTTTTCTAATTATATAT
CTTTCATAATGCAGTACCCCATTCCCTTTTTTTTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_c07.b1 MSMg01no319_c07.b1 CHROMAT_FILE:
MSMg01no319_c07.b1 PHD_FILE: MSMg01no319_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:26 2005
         (226 letters)



>mm_chr3_84399546_84400171
          Length = 626

 Score =  414 bits (214), Expect = e-120
 Identities = 223/226 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggcagtgctcctgccttggcctctcaaatgctgggattgtcggtataagccaatatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggcagtgctcctgccttggcctctcaaatgctgggattgtcggtataagccaatatg 260

                                                                       
Query: 61  tacagtctaattaaacttttgagcatcatagtagtataaaattatgttctaattagttaa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagtctaattaaacttttgagcatcatagtagtataaaattatgttctaattagttaa 320

                                                                       
Query: 121 tcttccagactgaaaaaatttatgaaaatatattctaagctgctgtgcaccaagatgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttccagactgaaaaaatttatgaaaatatattctaagctgctgtgcaccaagatgatg 380

                                                         
Query: 181 aacaatgtggttcttgttgctttcaaattacttgtccaattaagtc 226
           |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 381 aacaatgtggttcttgctgctttcaaattacttgtcaaattaagtc 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no319_c07.g1 MSMg01no319_c07.g1 CHROMAT_FILE:
MSMg01no319_c07.g1 PHD_FILE: MSMg01no319_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:26 2005
         (286 letters)



>mm_chr3_84557291_84557976
          Length = 686

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaccttagtgagaggtgactaagaattacatcaaatcctcagtaggggatcaaaagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggaccttagtgagaggtgactaagaattacatcaaatcctcagtaggggatcaaaagtta 341

                                                                       
Query: 61  atagcaaaattattccatagctctctgtgttagctcatatgcattttgattaggttaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atagcaaaattattccatagctctctgtgttagctcatatgcattttgattaggttaact 281

                                                                       
Query: 121 atttggctcactctctattctttcctaataaaattattcaatcaagccaaacttctttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atttggctcactctctattctttcctaataaaattattcaatcaagccaaacttctttgg 221

                                                                       
Query: 181 gagtctatgtgcatttgttggtatgcatgtgcctatgcaggtcaggggtcaatcttggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gagtctatgtgcatttgttggtatgcatgtgcctatgcaggtcaggggtcaatcttggtg 161

                                                       
Query: 241 tcattcctcagtgtaatgtcagggaaatattagtgatccccccc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tcattcctcagtgtaatgtcagggaaatattagtgatccccccc 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)