BAC Information

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BAC

Clone NameMSMg01-320L09
Chromosome3 (Build37)
Map Location 77,951,375 - 77,951,660
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L09.T7 (MSMg01no320_l09.b1)MSMg01-320L09.TJ (MSMg01no320_l09.g1)
ACCAG439875AG439876
length735730
length of high quality
(start - end)
320 (45 - 364)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no320_l09.b1 PHD_FILE: MSMg01no320_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:17 2005CHROMAT_FILE: MSMg01no320_l09.g1 PHD_FILE: MSMg01no320_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCCGGAAGGATTAAAGGTATGTGAGAACTACTCCTTTGTCTAAG
AGCTTCTGTCATAAGAGTTGTACCACTTGGGAAGAGGTCTGCTTTCCCAA
AATGCCACCTGAAGCTCCTCCACACTCTTCACTGGCTAGTCAGCCTCTCA
TAGACCCAGAACAACCAACTCAGTGCAGGGCATCAGGGCATCATGGAGTA
ACAGAGATGACACAGTGGAGACAGAGGTGGAGCCAAATGCAGCAGTTGAA
GTAGCCTGAAATGACTTCCCTTCTCTGCTCCACTTGCTCCCCTTTGCATG
AACTCTTGCATTTGGTTGTGTTCCCACCCCTCCCTGGAACGCCTCTGATA
CACAGGCCCACAAGAGTGCTTAAACACTGATAAAATAGACTGGGGTATGG
AGGATAAGTCAAATGCTGTTATGGAACTTCCTGAAAGTTTGACCTAACTG
TTAATATTAGTGATGTTGAAAAATAATGTGTACCTAATGAAGTGCCTTAA
ATAGAGCTAAGTGGATTTGATTAAAGGTATTTTTTAATTAGAATGTTGAA
AACATCAATTTTTTATTAGATATTTTCTTCATTTACATTTCANATTCTGT
CCCAAAAGTCTCCTATACCCTACCCCTGCCCTGCTGCCCAGCACACCCAC
TCCCGTTTCCTGGCCCTGGCATTCCCCTGTACTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAATCTATTGCTTTCTCTGA
GTACCAACTGAGTGGTTTATTTCACATGGGGTTAATACTAACTGGAAATA
CCTGGAGTTCTAGCTCCCTATAAAATATGCTGGTCTGACAAAACTATAAG
ACTAAGTATGAAACACAAAAACAAAAGTTTCTTTCTTCTTTTCTTTCTTA
GCTTTTATCAAGGTATAAGGGAGAAGAGAACTAATTCATTTTCATCCTAG
TTAATAACTTCAAATAACTGAAGGTAATTAAAAAGCTGAACAACTCTCTT
TATTAAAGACCATTTATGATAAACCCTCCCCCCTTAATTAGAGTATTTTT
TATTTATTATAAAAGTTCATAGAAATTAATTACACATTAATGGAGCCCTC
GGTTTTAAGAAATTATAAAAGATTATATTTTATCATTTAACATTTTTCAC
GAATAACAAAGCATTAACATTTTTAAAGTGTTATCATACTTATGCATTTA
TTAATCTACTTAGAGCAAACATACCTAAATTATTCTAAAAGTAAAACAGA
ATTTAAAAATTAAATATGTTTTAAATATTCATTAAAAGTCTCAAGATATA
ATGCATGATAAATTGTCTTATTCACACAATTATCTCTTTAATTAAGAGAC
CTAAAATTTTAAATAATCTTTCAATTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l09.g1 MSMg01no320_l09.g1 CHROMAT_FILE:
MSMg01no320_l09.g1 PHD_FILE: MSMg01no320_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:17 2005
         (287 letters)



>mm_chr3_77951175_77951861
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaaatctattgctttctctgagtaccaactgagtggtttatttcacatggggttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaaatctattgctttctctgagtaccaactgagtggtttatttcacatggggttaat 260

                                                                       
Query: 61  actaactggaaatacctggagttctagctccctataaaatatgctggtctgacaaaacta 120
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 261 actaactggaaatacctggagttttcgctccctataaaatatgctggtctgacaaaacta 320

                                                                       
Query: 121 taagactaagtatgaaacacaaaaacaaaagtttctttcttcttttctttcttagctttt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagactaagtatgaaacacaaaaacaaaagtttctttcttcttttctttcttagctttt 380

                                                                       
Query: 181 atcaaggtataagggagaagagaactaattcattttcatcctagttaataacttcaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaaggtataagggagaagagaactaattcattttcatcctagttaataacttcaaata 440

                                                         
Query: 241 actgaaggtaattaaaaagctgaacaactctctttattaaagacca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgaaggtaattaaaaagctgaacaactctctttattaaagacca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)