BAC Information

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BAC

Clone NameMSMg01-320L19
Chromosome3 (Build37)
Map Location 45,424,704 - 45,424,992
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L19.T7 (MSMg01no320_l19.b1)MSMg01-320L19.TJ (MSMg01no320_l19.g1)
ACCAG439895AG439896
length731731
length of high quality
(start - end)
---289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no320_l19.b1 PHD_FILE: MSMg01no320_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:19 2005CHROMAT_FILE: MSMg01no320_l19.g1 PHD_FILE: MSMg01no320_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTATTAAGTAGATGCTTCAATAT
ATGTTGAGATGAACTTGCGTGGAAAAGGACTGAAAAAGGTAAATCCAGAC
ATCTGTGTGTAGGATGTAAAATATCAACTGAGACCTGAATAGCTTTGAGC
AAGGAATCTGAAATTAGAAGTCCATTTGAGATGGCAACTCTCTCCAGTCG
AGAGGGAAAATAGAAGGAATCTGTGATCTCTAAAATAAAAGATAACTGGG
ATTGATTTAAATGCACACTATTCAGAACAGACTCAGAGGATATTTTATTT
CTTTTTTAATCTTCTTATACACGCCCCCCCCCTTTTAAAAGTTTTATGCC
TTGCTCATGCTAACTAGAAAAGGTAGAACAAAGACCTTGCTTTGACCTTT
AAGTGGTTAGCATACTGTGCACTATTACAAGGTGCTAATTCACATGCTAG
CTCAGTGAATCTTGACAAAGTACTCTCTCTTTCCCTTCTTCTTCCTCCCC
TTCCCCTTCTAACTTCTCTCCCTCTCCTTCCATCTCCCTTCCTCTCTCCC
TTTCCCTTTTTATCCCTCTTCCTCTCCCTTCCCACCCCACCTCTCTCTCT
CACACACACAAACAAACAAGGACACCCACAAATACACACCTCAAGAAATC
ATTTTTTAAACCTTCAAGTCAGTATAGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l19.g1 MSMg01no320_l19.g1 CHROMAT_FILE:
MSMg01no320_l19.g1 PHD_FILE: MSMg01no320_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:19 2005
         (289 letters)



>mm_chr3_45424504_45425192
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttattaagtagatgcttcaatatatgttgagatgaacttgcgtggaaaaggactgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 489 ctttattaagtagatgcttcaatatatgttgagatgaacttgcatggaaaaggactgaaa 430

                                                                       
Query: 61  aaggtaaatccagacatctgtgtgtaggatgtaaaatatcaactgagacctgaatagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaggtaaatccagacatctgtgtgtaggatgtaaaatatcaactgagacctgaatagctt 370

                                                                       
Query: 121 tgagcaaggaatctgaaattagaagtccatttgagatggcaactctctccagtcgagagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 369 tgagcaaggaatctgaaattagaagtccatttgagatggcaactctctccagtctagagg 310

                                                                       
Query: 181 gaaaatagaaggaatctgtgatctctaaaataaaagataactgggattgatttaaatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaaaatagaaggaatctgtgatctctaaaataaaagataactgggattgatttaaatgca 250

                                                            
Query: 241 cactattcagaacagactcagaggatattttatttcttttttaatcttc 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cactattcagaacagactcagaggatattttatttcttttttaatcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)